Browse where type is Software and year is 2020
Number of items: 60.
A
adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020)
Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
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cmmid/pcr-profile. (2020)
Hellewell, Joel, Russell, Timothy W., The SAFER Investigators and Field Study Team, The Crick COVID-19 Consortium, CMMID COVID-19 working group, Beale, Rupert, Kelly, Gavin, Houlihan, Catherine, Nastouli, Eleni, Kucharski, Adam J.
cmmid/pcr_test_trace. (2020)
Clifford, Samuel, Quilty, Billy
Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020)
Thompson, Jennifer
CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020)
Nash, Stephen, Thompson, Jennifer, Leurent, Baptiste
cmmid/travel_screening_strategies. (2020)
Clifford, Samuel, Quilty, Billy J., Russell, Timothy W., Liu, Yang, Chan, Yung-Wai Desmond, Pearson, Carl A. B., Eggo, Rosalind M., Endo, Akira, CMMID COVID-19 Working Group, Flasche, Stefan, Edmunds, W. John
cmmid/covid-uk. (2020)
Davies, Nicholas G, Kucharski, Adam J., Eggo, Rosalind M, Gimma, Amy, COVID-19 Working Group, Edmunds, W. John
cmmid/ringbp. (2020)
Hellewell, Joel
Covid 2019 tracker. (2020)
Parker, Edward
Causal Sim code. (2020)
Keogh, Ruth, Seaman, Shaun R., Gran, Jon Michael, Vansteelandt, Stijn
E
epiforecasts/rt-comparison-uk-public: v1.0.0. (2020)
Sherratt, Katharine
emilyherrett/qrisk_cprd_gold: QRISK bundle version 2.0. (2020)
Herrett, Emily
epiforecasts/covid: Submission release. (2020)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
epiforecasts/EpiSoon. (2020)
Abbott, Sam, Bosse, Nikos, DeWitt, Michael, Rau, Andrea, Chateigner, Aurelien, Mareschal, Sylvain, Hellewell, Joel
epiforecasts/NCoVUtils. (2020)
Abbott, Sam, Sherratt, Katharine, Gibbs, Hamish, Finger, Flavio, Campbell, Paul, Hellewell, Joel, Barks, Patrick, Meakin, Sophie, Lee, Haze
Effectiveness of airport-based interventions at detecting travellers and delaying an outbreak of COVID-19 (formerly 2019-nCoV). (2020)
Clifford, Samuel, Quilty, Billy, CMMID nCoV working group, Pearson, Carl, Flasche, Stefan, Eggo, Rosalind M.
F
francescochecchi/aden_covid. (2020)
Checchi, Francesco
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
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gasparrini/2019_vicedo-cabrera_Epidem_Rcodedata. (2020)
Gasparrini, Antonio
gasparrini/2017_lopezbernal_IJE_codedata. (2020)
Lopez-Bernal, James, Cummins, Steven, Gasparrini, Antonio
gasparrini/ItalyCOVIDdeath. (2020)
Scortichini, Matteo, Schneider dos santos, Rochelle, De' Donato, De Sario, Manuela, Michelozzi, Paola, Davoli, Marina, Masselot, Pierre, Sera, Francesco, Gasparrini, Antonio
geosocial-outbreaker: Integrating geographical and social contact data to reconstruct transmission chains. (2020)
Robert, Alexis
I
idmodelr: Infectious Disease Model Library and Utilities. (2020)
Abbott, Sam, Endo, Akira
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
M
migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020)
Fernandez, Miguel Angel Luque, Zivich, Paul, Smith, Matthew James
Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020)
Greener, Robert
mquaife/kenya_mixing. (2020)
Quaife, Matthew
Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020)
Willem, Lander, Xiao, Li, Antillon, Marina, Bilcke, Joke, Jit, Mark, Beutels, Philippe
O
o2geosocial. (2020)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J.
Open Science during the pandemic. (2020)
Besançon, Lonni, Deforet, Maxime, Leyrat, Clemence, Segalas, Corentin, Jiang, Haiting, Masuzzo, Paola
P
ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020)
Colbourn, Tim, Waites, William, Manheim, David, Sturniolo, Simone, Kerr, Cliff C., Panovska-Griffiths, Jasmina, Colbourn, Greg
PierreMasselot/Sedimentation_analysis. (2020)
Masselot, Pierre
projections: Project Future Case Incidence. (2020)
Jombart, Thibaut, Nouvellet, Pierre, Bhatia, Sangeeta, Kamvar, Zhian N., Taylor, Tim, Ghozzi, Stephane
pegas: Population and Evolutionary Genetics Analysis System. (2020)
Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud
Probability of a large 2019-nCoV outbreak following introduction of cases. (2020)
Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.
R
RtD3. (2020)
Gibbs, Hamish, Abbott, Sam, Funk, Sebastian
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group
Religion, Cooperation, Fertility, and Child Outcomes. (2020)
Shaver, John, Power, Eleanor A., Purzycki, Benjamin Grant, Shenk, Mary K, Bulbulia, Joseph A., Sear, Rebecca, Sosis, Richard, Watts, Joseph
S
sbfnk/rbi.helpers. (2020)
Funk, Sebastian, Finger, Flavio
StefanFlasche/Pneumo_Trans_Inf. (2020)
Flasche, Stefan
Social Contact Rates (SOCRATES) Data Tool. (2020)
Willem, Lander, Hoang, Van Thang, Funk, Sebastian, Coletti, Pietro, Beutels, Philippe, Hens, Niel
T
timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020)
Hellewell, Joel, Lucas, Tim, Davis, Emma, Abbott, Sam, Gimma, Amy, Thompson, Robin
Testing the buffering hypothesis: breastfeeding problems, cessation and social support. (2020)
Page, Abigail E., Emmott, Emily H, Myers, Sarah
tomsumner/Latency_Model_Comparison_Public. (2020)
Sumner, Tom
thimotei/covid_travel_restrictions. (2020)
Russell, Timothy W., Wu, Joseph T, Clifford, Samuel, CMMID COVID-19 working group, Edmunds, W John, Kucharski, Adam J., Jit, Mark
trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020)
Jombart, Thibaut, Schumacher, Dirk
thibautjombart/covid19_bed_occupancy: Second major release. (2020)
Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
Y
yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020)
Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra