Items where Data Creator is Abbott, Sam"
Number of items: 78.
A
akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. (2022)
Endo, Akira, Murayama, Hiroaki, Abbott, Sam, Ratnayake, Ruwan, Pearson, Carl A. B., Edmunds, W. John, Fearon, Elizabeth, Funk, Sebastian
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021)
Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021)
Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
C
covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022)
actions-user, Sherratt, Katharine, Gruson, Hugo, Funk, Sebastian, Bracher, Johannes, BIOCOM-SC, Walraven, Robert, miraanto, h-veronika, Rodiah, Isti, gr3gr3, Kraus, David, hgurung-iem, epiforecasts-bot, Xu, Frost Tianjian, Heyder, Stefan, aniruddhadiga, Abbott, Sam, Sun, Tao, Mingio, Marco, Deuschel, Jannik, pmontman, janezz25, neele-itwm, Gibson, Graham, EpiGraph, Tarantino, Barbara, Karlen, Dean, Bhatia, Sangeeta, borjarv
Continent Summary Reproduction Number (R) Based on Reported Cases. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
covidregionaldata: Subnational data for COVID-19 epidemiology. (2021)
Palmer, Joseph, Sherratt, Katharine, Martin-Nielsen, Richard, Bevan, Jonnie, Gibbs, Hamish, CMMID COVID-19 Working Group, Funk, Sebastian, Abbott, Sam
Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
D
Data for "Human judgement forecasting of COVID-19 in the UK" by Bosse et. al (2023). (2023)
Bosse, Nikos I., Abbott, Sam, Bracher, Johannes, Van leeuwen, Edwin, Cori, Anne, Funk, Sebastian
dchodge/hero-study: Version submitted with WOR reviewers comments. (2022)
Hodgson, David, Abbott, Sam
Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021)
Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian
E
epinowcast/baselinenowcast-paper. (2025)
Johnson, Kaitlyn E., Abbott, Sam, Bracher, Johannes
epinowcast/epidist. (2025)
Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
epiforecasts/ringbp. (2023)
Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy
epiforecasts/transformation-forecast-evaluation. (2023)
Bosse, Nikos, Bracher, Johannes, Abbott, Sam, Funk, Sebastian
epiforecasts/covid.german.forecasts. (2022)
Bosse, Nikos, Abbott, Sam, Funk, Sebastian
epiforecasts/simplified-forecaster-evaluation. (2022)
Abbott, Sam, Bosse, Nikos
epiforecasts/scoringutils. (2022)
Bosse, Nikos, Abbott, Sam, Reich, Nicholas G, Funk, Sebastian
epiforecasts/covid19-hospital-activity. (2022)
Meakin, Sophie, Abbott, Sam
epiforecasts/forecast.vocs. (2021)
Abbott, Sam, Bracher, Johannes
epiforecasts/epinowcast. (2021)
Abbott, Sam, Monticone, Pietro
epiforecasts/covid19.sgene.utla.rt. (2021)
Abbott, Sam, Funk, Sebastian
epiforecasts/EpiNow2. (2021)
Abbott, Sam, Hickson, Joe, Badr, Hamada S., Funk, Sebastian, Monticone, Pietro, Ellis, Peter, Munday, James D., Allen, Jamie, Pearson, Carl A. B., DeWitt, Michael, Bosse, Nikos, Meakin, Sophie
epiforecasts/covid19.nhs.data: Initial release. (2021)
Abbott, Sam, Meakin, Sophie
epiforecasts/covid: Submission release. (2020)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
epiforecasts/EpiSoon. (2020)
Abbott, Sam, Bosse, Nikos, DeWitt, Michael, Rau, Andrea, Chateigner, Aurelien, Mareschal, Sylvain, Hellewell, Joel
epiforecasts/NCoVUtils. (2020)
Abbott, Sam, Sherratt, Katharine, Gibbs, Hamish, Finger, Flavio, Campbell, Paul, Hellewell, Joel, Barks, Patrick, Meakin, Sophie, Lee, Haze
Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020)
Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020)
Russell, Timothy W., Hellewell, Joel, Jarvis, Christopher I., Van-Zandvoort, Kevin, Abbott, Sam, Ratnayake, Ruwan, Flasche, Stefan, Eggo, Rosalind M, Kucharski, Adam J.
epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020)
Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
F
fsera/COVIDWeather. (2021)
Sera, Francesco, Abbott, Sam, Roye, Dominic
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
I
Improving modelling for epidemic responses: reflections. (2023)
Sherratt, Katharine, Abbott, Sam, Carnegie, Anna, Liu, Yang
idmodelr: Infectious Disease Model Library and Utilities. (2020)
Abbott, Sam, Endo, Akira
Inferring COVID-19 cases from recent death. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Van zandvoort, Kevin, Jarvis, Christopher
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
K
KITmetricslab/covid19-forecast-hub-de. (2021)
Bracher, J., Wolffram, D., Deuschel, J., Görgen, K., Ketterer, J.L., Ullrich, A., Abbott, Sam, Barbarossa, M.V., Bertsimas, D., Bhatia, S., Bodych, M., Bosse, Nikos I., Burgard, J.P., Castro, L., Fairchild, G., Fuhrmann, J., Funk, Sebastian, Gogolewski, K., Gu, Q., Heyder, S., Hotz, T., Kheifetz, Y., Kirsten, H., Krueger, T., Krymova, E., Li, M.L., Meinke, J.H., Michaud, I.J., Niedzielewski, K., Ożański, T., Rakowski, F., Scholz, M., Soni, S., Srivastava, A., Zieliński, J., Zou, D., Gneiting, T., Schienle, M.
L
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
N
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National Reproduction Number (R) Based on Reported Cases. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National Reproduction Number (R) Estimates Based on Reported Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
R
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian
rmjlros/COVID19_care_home_NPIs. (2021)
Rosello, Alicia, Abbott, Sam, Barnard, Rosanna C.
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
RtD3. (2020)
Gibbs, Hamish, Abbott, Sam, Funk, Sebastian
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group
S
seabbs/badtobetter: Initial release. (2023)
Abbott, Sam
seabbs/ecdc-weekly-growth-forecasts. (2022)
Abbott, Sam, Sherratt, Katharine
seabbs/getTBinR. (2020)
Abbott, Sam, Bekker-Nielsen Dunbar, Maria, Smith, Arfon
seabbs/CovidInterventionReview: CC0 license. (2020)
Abbott, Sam, Gaythorpe, Katy A.M., Imai, Natsuko, Liu, Yang
seabbs/AssessBCGPolicyChange. (2019)
Abbott, Sam
seabbs/SpeedyMarkov. (2019)
Abbott, Sam
seabbs/EstZoonoticTB. (2019)
Abbott, Sam
seabbs/ModelTBBCGEngland. (2019)
Abbott, Sam
T
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.
timcdlucas/ringbp: Code as used in the paper "Engagement and adherence trade-offs for SARS-CoV-2 contact tracing". (2020)
Hellewell, Joel, Lucas, Tim, Davis, Emma, Abbott, Sam, Gimma, Amy, Thompson, Robin
thimotei/CFR_calculation. (2020)
Russell, Timothy W., Hellewell, Joel, Abbott, Sam, Jarvis, Christopher, Zandvoort, Kevin van, Ratnayake, Ruwan, CMMID nCov working group, Flasche, Stefan, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J.
U
Unexposed populations and potential COVID-19 burden in European countries as of 21st November 2021. (2021)
Chapman, Lloyd A C, Barnard, Rosanna C, Russell, Timothy W, Abbott, Sam, Van Zandvoort, Kevin, Davies, Nicholas G, Kucharski, Adam J