Items where Data Creator is Funk, Sebastian"
Number of items: 86.
A
akira-endo/schooldynamics_FluMatsumoto14-15: Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022)
Endo, Akira, Uchida, Mitsuo, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian
akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. (2022)
Endo, Akira, Murayama, Hiroaki, Abbott, Sam, Ratnayake, Ruwan, Pearson, Carl A. B., Edmunds, W. John, Fearon, Elizabeth, Funk, Sebastian
akira-endo/schooldynamics_FluMatsumoto14-15: Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. (2021)
Endo, Akira, Uchida, Mitsuo, Hayashi, Naoki, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England". (2021)
Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
Analysis data and code for "Estimated transmissibility and impact of SARS-CoV-2 Variant of Concern 202012/01 in England". (2021)
Davies, Nicholas G., Abbott, Sam, Barnard, Rosanna C., Jarvis, Christopher I., Kucharski, Adam J., Munday, James, Pearson, Carl A. B., Russell, Timothy W., Tully, Damien C., Washburne, Alex D., Wenseleers, Tom, Gimma, Amy, Waites, William, Wong, Kerry LM, van Zandvoort, Kevin, Silverman, Justin D., Diaz-Ordaz, Karla, Keogh, Ruth, Eggo, Rosalind M., Funk, Sebastian, Jit, Mark, Atkins, Katherine E., Edmunds, W. John
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
Additional file 2: of Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019)
Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
adamkucharski/fiji-denv3-2014. (2018)
Kucharski, Adam J, Kama, Mike, Watson, Conall H, Aubry, Maite, Funk, Sebastian, Henderson, Alasdair D, Brady, Oliver J, Vanhomwegen, Jessica, Manuguerra, Jean-Claude, Lau, Colleen L, Edmunds, W John, Aaskov, John, Nilles, Eric James, Cao-Lormeau, Van-Mai, Hue, Stephane, Hibberd, Martin L
B
Bed capacity for Ebola patients in Sierra Leone. (2015)
Camacho, Anton, Kucharski, Adam J., Aki-Sawyerr, Y, White, M A, Flasche, Stefan, Baguelin, Marc, Pollington, T M, Carney, J, Glover, Rebecca, Smout, E, Tiffany, A, Edmunds, W. John, Funk, Sebastian
C
cfr: Estimate Disease Severity and Case Ascertainment. (2024)
Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian
covid19-forecast-hub-europe/euro-hub-ensemble: Zenodo release. (2022)
Sherratt, Katharine, Funk, Sebastian
covid19-forecast-hub-europe/covid19-forecast-hub-europe. (2022)
actions-user, Sherratt, Katharine, Gruson, Hugo, Funk, Sebastian, Bracher, Johannes, BIOCOM-SC, Walraven, Robert, miraanto, h-veronika, Rodiah, Isti, gr3gr3, Kraus, David, hgurung-iem, epiforecasts-bot, Xu, Frost Tianjian, Heyder, Stefan, aniruddhadiga, Abbott, Sam, Sun, Tao, Mingio, Marco, Deuschel, Jannik, pmontman, janezz25, neele-itwm, Gibson, Graham, EpiGraph, Tarantino, Barbara, Karlen, Dean, Bhatia, Sangeeta, borjarv
Continent Summary Reproduction Number (R) Based on Reported Cases. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
CoMix - Age structured contact matrices for 9 key periods of the COVID-19 epidemic in England. (2021)
Munday, James D, Jarvis, Christopher I., Gimma, Amy, Wong, Kerry L, van Zandvoort, Kevin, Funk, Sebastian, Edmunds, W. John
covidregionaldata: Subnational data for COVID-19 epidemiology. (2021)
Palmer, Joseph, Sherratt, Katharine, Martin-Nielsen, Richard, Bevan, Jonnie, Gibbs, Hamish, CMMID COVID-19 Working Group, Funk, Sebastian, Abbott, Sam
Collated Results of the National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Tests, Hospital Admissions and Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
Continent Summary Reproduction Number (R) Based on Reported Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
COVID19 settings of transmission - collected reports database. (2020)
Leclerc, Quentin J., Fuller, Naomi M., Knight, Lisa E., Funk, Sebastian, Knight, Gwenan M.
D
Data for "Human judgement forecasting of COVID-19 in the UK" by Bosse et. al (2023). (2023)
Bosse, Nikos I., Abbott, Sam, Bracher, Johannes, Van leeuwen, Edwin, Cori, Anne, Funk, Sebastian
Data and R code accompanying the manuscript "The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia". (2021)
Pavelka, Martin, van Zandvoort, Kevin, Abbott, Sam, Sherratt, Katharine, Majdan, Marek, Jarcuska, Pavel, Krajci, Marek, Flasche, Stefan, Funk, Sebastian
E
epiforecasts/eval-by-method. (2025)
Sherratt, Katharine, Funk, Sebastian
epinowcast/epidist. (2025)
Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael
epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024)
Azam, James M., Funk, Sebastian, Finger, Flavio, Kamvar, Zhian N., Gruson, Hugo, Mané, Karim, Gupte, Pratik, Lambert, Joshua W.
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
epiforecasts/multi-model-information: Publication release. (2024)
Sherratt, Katharine, Funk, Sebastian
epiforecasts/ringbp. (2023)
Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy
epiforecasts/transformation-forecast-evaluation. (2023)
Bosse, Nikos, Bracher, Johannes, Abbott, Sam, Funk, Sebastian
epiforecasts/covid.german.forecasts. (2022)
Bosse, Nikos, Abbott, Sam, Funk, Sebastian
epiforecasts/scoringutils. (2022)
Bosse, Nikos, Abbott, Sam, Reich, Nicholas G, Funk, Sebastian
epiforecasts/ons_severity_estimates. (2022)
Funk, Sebastian
epiforecasts/covid19.sgene.utla.rt. (2021)
Abbott, Sam, Funk, Sebastian
epiforecasts/EpiNow2. (2021)
Abbott, Sam, Hickson, Joe, Badr, Hamada S., Funk, Sebastian, Monticone, Pietro, Ellis, Peter, Munday, James D., Allen, Jamie, Pearson, Carl A. B., DeWitt, Michael, Bosse, Nikos, Meakin, Sophie
epiforecasts/covid: Submission release. (2020)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
Extended data: Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020)
Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020)
Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
Ebola Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017)
Marks, Michael, Camacho, Anton, Kucharski, Adam, Funk, Sebastian, Edmunds, John, Piot, Peter
description
Ebola virus disease in the Democratic Republic of the Congo, 1976-2014: Figures and Data. (2015)
Rosello, Alicia, Mossoko, Mathias, Flasche, Stefan, Vanhoek, Albert, Mbala, Placide, Camacho, Anton, Funk, Sebastian, Kucharski, Adam, Ilunga, Benoit Kebela, Edmunds, John, Piot, Peter, Baguelin, Marc, Tamfum, Jean-Jacques Muyembe
description
F
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
Follow up time from The relative fitness of drug-resistant Mycobacterium tuberculosis: a modelling study of household transmission in Peru. (2018)
Knight, Gwenan M., Zimic, Mirko, Funk, Sebastian, Gilman, Robert H., Friedland, Jon S., Grandjean, Louis
I
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
K
kingaa/pomp. (2025)
King, Aaron A, O'Dea, Eamon, Asfaw, Kidus, Wheeler, Jesse, Breto, Carles, Ionides, Edward, Akinshin, Andrey, Voipio, Timo, Funk, Sebastian
KITmetricslab/covid19-forecast-hub-de. (2021)
Bracher, J., Wolffram, D., Deuschel, J., Görgen, K., Ketterer, J.L., Ullrich, A., Abbott, Sam, Barbarossa, M.V., Bertsimas, D., Bhatia, S., Bodych, M., Bosse, Nikos I., Burgard, J.P., Castro, L., Fairchild, G., Fuhrmann, J., Funk, Sebastian, Gogolewski, K., Gu, Q., Heyder, S., Hotz, T., Kheifetz, Y., Kirsten, H., Krueger, T., Krymova, E., Li, M.L., Meinke, J.H., Michaud, I.J., Niedzielewski, K., Ożański, T., Rakowski, F., Scholz, M., Soni, S., Srivastava, A., Zieliński, J., Zou, D., Gneiting, T., Schienle, M.
L
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Admissions. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
Local Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
M
Mean contacts by age and date. (2022)
Gimma, Amy, Munday, James D., Wong, Kerry L. M., Coletti, Pietro, Van Zandvoort, Kevin, Prem, Kiesha, Klepac, Petra, Rubin, G. James, Funk, Sebastian, Edmunds, W. John, Jarvis, Christopher I.
N
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for South Africa Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Canada Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Colombia Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Belgium Based on Test Results. (2021)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National Reproduction Number (R) Based on Reported Cases. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National Reproduction Number (R) Estimates Based on Reported Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Brazil Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Germany Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for India Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for Italy Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Deaths. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Hospital Admissions. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United Kingdom Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
National and Subnational Estimates of the Covid 19 Reproduction Number (R) for the United States of America Based on Test Results. (2020)
Abbott, Sam, Bennett, Christopher, Hickson, Joe, Allen, Jamie, Sherratt, Katharine, Funk, Sebastian
O
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
o2geosocial. (2020)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J.
P
Probability of a large 2019-nCoV outbreak following introduction of cases. (2020)
Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.
Pathways to Low Fertility. (2020)
Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
Potential for large outbreaks of Ebola virus disease: Supplementary Data. (2014)
Camacho, Anton, Kucharski, Adam, Funk, Sebastian, Breman, J, Piot, Peter, Edmunds, John
R
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy. (2021)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
RtD3. (2020)
Gibbs, Hamish, Abbott, Sam, Funk, Sebastian
Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019)
Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". (2019)
Funk, Sebastian
R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017)
Marks, Michael, Mitja, Oriol, Fitzpatrick, Christopher, Asiedu, Kingsley, Solomon, Anthony W., Mabey, David, Funk, Sebastian
description
rbi: R Interface to LibBi. (2017)
Jacob, Pierre E., Lee, Anthony, Murray, Lawrence, Funk, Sebastian
S
superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025)
Lambert, Joshua W., Kucharski, Adam J., Adam, Dillon C., Funk, Sebastian, Gupte, Pratik, Gruson, Hugo, Azam, James M., Hartgerink, Chris
simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025)
Lambert, Joshua W., Tamayo, Carmen, Gruson, Hugo, Gupte, Pratik R., Kucharski, Adam J., Hartgerink, Chris, Funk, Sebastian
Supplementary Material: Climate-sensitive disease outbreaks in the aftermath of extreme climatic events: a scoping review. (2022)
Alcayna, Tilly, Fletcher, Isabel, Gibb, Rory, Tremblay, Léo, Funk, Sebastian, Rao, Bhargavi, Lowe, Rachel
Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study". (2021)
Lovell-Read, Francesca A., Funk, Sebastian, Obolski, Uri, Donnelly, Christl A., Thompson, Robin N.
sbfnk/rbi.helpers. (2020)
Funk, Sebastian, Finger, Flavio
Social Contact Rates (SOCRATES) Data Tool. (2020)
Willem, Lander, Hoang, Van Thang, Funk, Sebastian, Coletti, Pietro, Beutels, Philippe, Hens, Niel
Social Contacts Data. (2019)
Funk, Sebastian, White, Richard, Edmunds, W. John
sbfnk/epimixr. (2019)
Funk, Sebastian
Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. (2018)
Funk, Sebastian
S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016)
Kucharski, Adam J., Funk, Sebastian, Eggo, Rosalind M., Mallet, Henri-Pierre, Edmunds, W. John, Nilles, Eric J.
description
W
Weekly CoMix contact matrices for UKHSA COVID-19 dashboard and ONS COVID-19 infection survey age-groups. (2022)
Munday, James D., Jarvis, Christopher I., Gimma, Amy, Wong, Kerry LM, Van Zandvoort, Kevin, Funk, Sebastian, Edmunds, W John
Wuhan Seeding Vs Transmission. (2020)
Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel