Data capture method
Number of items: 77.
A
Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission. (2022)
Woodhouse, Mark, Aspinall, Willy, Sparks, RSJ, Brooks-Pollock, Ellen, Relton, Caroline L.
anavica/mcc_ccattr_NCC. (2021)
Vicedo-Cabrera, A. M., Gasparrini, Antonio, Royé, Dominic
Age-structured SEIR model for COVID-19 outbreak in Wuhan, China. (2020)
Prem, Kiesha, Liu, Yang, Russell, Timothy W, Kucharski, Adam J, Eggo, Rosalind M, Davies, Nicholas G, Jit, Mark, Klepac, Petra, Flasche, Stefan, Clifford, Samuel, Pearson, Carl A B, Munday, James D, Abbott, Sam, Gibbs, Hamish, Rosello, Alicia, Quilty, Billy J, Jombart, Thibaut, Sun, Fiona, Diamond, Charlie, Gimma, Amy, Van zandvoort, Kevin, Funk, Sebastian, Jarvis, Christopher I, Edmunds, W John, Bosse, Nikos I, Hellewell, Joel
Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control. (2017)
Choi, Yoon Hong, Campbell, Helen, Amirthalingam, Gayatri, Van Hoek, Albert Jan, Miller, Elizabeth
folder_zip
C
cmmid/covid_quar_test_import_risk. (2021)
Quilty, Billy
cmmid/quar_test_contact_tracing. (2021)
Quilty, Billy
Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020)
Thompson, Jennifer
CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020)
Nash, Stephen, Thompson, Jennifer, Leurent, Baptiste
cmmid/travel_screening_strategies. (2020)
Clifford, Samuel, Quilty, Billy J., Russell, Timothy W., Liu, Yang, Chan, Yung-Wai Desmond, Pearson, Carl A. B., Eggo, Rosalind M., Endo, Akira, CMMID COVID-19 Working Group, Flasche, Stefan, Edmunds, W. John
Causal Sim code. (2020)
Keogh, Ruth, Seaman, Shaun R., Gran, Jon Michael, Vansteelandt, Stijn
Computer code of the coinfection model. (2018)
Eggo, Rosalind M.
description
Cost-Effectiveness of Take-Home Naloxone for the Prevention of Overdose Fatalities among Heroin Users in the United Kingdom: Supplemental Materials. (2018)
Langham, Sue, Wright, Antony, Kenworthy, James, Grieve, Richard, Dunlop, William C.N.
Cost-effectiveness of Ward Closure to Control Outbreaks of Norovirus Infection in UK National Health Service Hospitals: Epidemic simulation model. (2016)
Sadique, Zia, Lopman, Ben, Cooper, Ben S, Edmunds, John
Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. (2015)
Kucharski, Adam, Edmunds, John
description
Cost-Effectiveness of HIV Drug Resistance Testing to Inform Switching to Second Line Antiretroviral Therapy in Low Income Settings: Supporting material. (2014)
Phillips, Andrew, Cambiano, Valentina, Nakagawa, Fumiyo, Magubu, Travor, Miners, Alec, Ford, Debbie, Pillay, Deenan, De Luca, Andrea, Lundgren, Jens, Revill, Paul
Combining insecticide treated bed nets and indoor residual spraying for malaria vector control in Africa. (2012)
Okumu, Fredros
description
Cardiovascular Risk Score Calculator. (2006)
Pocock, Stuart, Bennett, Mike, Mccormack, Valerie, Gueyffier, François, Boutitie, Florent, Fagard, Robert H., Boissel, Jean-Pierre
D
Data for: "Neonatal mortality risk of large for gestational age and macrosomic live births in 15 countries including 115.6 million nationwide linked records, 2000–2020". (2023)
Suárez-Idueta, Lorena, Ohuma, Eric O., Chang, Chia-Jung, Hazel, Elizabeth A., Yargawa, Judith, Okwaraji, Yemisrach B., Bradley, Ellen, Gordon, Adrienne, Sexton, Jessica, Lawford, Harriet, Paixao cruz, Enny S., Falcão, Ila Rocha, Lisonkova, Sarka, Wen, Qi, Velebil, Petr, Jírová, Jitka, Horváth-Puhó, Erzsebet, Sørensen, Henrik Toft, Sakkeus, Luule, Abuladze, Lili, Yunis, Khalid A., Bizri, Ayah Al, Alvarez Lopez, Sonia, Broeders, Lisa, van Dijk, A. E., Alyafei, Fawziya, AlQubaisi, Mai, Razaz, Neda, Söderling, Jonas, Smith, Lucy K., Matthews, Ruth, Lowry, Estelle, Rowland, Neil, Wood, Rachael, Monteath, Kirsten, Pereyra, Isabel, Pravia, Gabriella, Lawn, Joy E., Blencowe, Hannah
description
Decision Modelling for Health Economic Evaluation - Exercises. (2022)
Briggs, Andrew
folder_zip
Denvaxia-in-Phillippines. (2019)
Flasche, Stefan
E
epiforecasts/ringbp. (2023)
Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy
epiforecasts/covid: Submission release. (2020)
Abbott, Sam, Sherratt, Katharine, Funk, Sebastian, Hellewell, Joel
epiforecasts/WuhanSeedingVsTransmission: Resubmission to Wellcome Open Research. (2020)
Abbott, Sam, Funk, Sebastian, Munday, James D., Hellewell, Joel
Elimination of visceral leishmaniasis in the Indian subcontinent: a comparison of predictions from three transmission models. (2017)
Le Rutte, Epke A., Chapman, Lloyd A.C., Coffeng, Luc E., Jervis, Sarah, Hasker, Epco C., Dwivedi, Shweta, Karthick, Morchan, Das, Aritra, Mahapatra, Tanmay, Chaudhuri, Indrajit, Boelaert, Marleen C., Medley, Graham F., Srikantiah, Sridhar, Hollingsworth, T. Deirdre, de Vlas, Sake J.
F
Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. (2020)
Hellewell, Joel, Abbott, Sam, Gimma, Amy, Bosse, Nikos, Jarvis, Christopher, Russell, Timothy, Munday, James, Kucharski, Adam, Edmunds, W John, Funk, Sebastian, Eggo, Rosalind, Sun, Fiona, Flasche, Stefan, Quilty, Billy, Davies, Nicholas, Liu, Yang, Clifford, Samuel, Klepac, Petra, Jit, Mark, Diamond, Charlie, Gibbs, Hamish, Van Zandvoort, Kevin
I
Interstate trade of cereals in India. (2020)
Harris, Francesca
grid_on
Inferring COVID-19 cases from deaths of confirmed cases. (2020)
Jombart, Thibaut, Abbott, Sam, Gimma, Amy, Zandvoort, Kevin, Clifford, Samuel, Jarvis, Christopher, Russell, Timothy, Funk, Sebastian, Gibbs, Hamish, Eggo, Rosalind M., Kucharski, Adam J., CMMID COVID-19 Working Group, Edmunds, W. John
M
Machine learning-based equations for improved body composition estimation in Indian adults. (2025)
Birk, Nick, Kulkarni, Bharati, Bhogadi, Santhi, Aggarwal, Aastha, Walia, Gagandeep Kaur, Gupta, Vipin, Rani, Usha, Mahajan, Hemant, Kinra, Sanjay, Mallinson, Poppy A. C.
MINT-data-v20230208. (2023)
Churcher, Thomas, Stopard, Isaac, Hamlet, Arran, Dee, Dominic, Sanou, Antoine, Rowland, Mark, Guelbeogo, Moussa, Emidi, Basiliana, Mosha, Jacklin, Challenger, Joseph, Denz, Adrian, Charles, Giovanni, Russell, Emma, Fitzjohn, Rich, Winskill, Pete, Fornadel, Christen, Mclean, Tom, Digre, Peder, Wagman, Joe, Mosha, Frank, Cook, Jackie, Akogbéto, Martin, Djogbenou, Luc, Ranson, Hilary, Manjurano, Alphaxard, N'fale, Sagnon, Protopopoff, Natacha, Accrombessi, Manfred, Ngufor, Corine, Foster, Geraldine, Sherrard-Smith, Ellie
migariane/TutorialCausalInferenceEstimators: Computational Causal Inference for Applied Researchers. (2020)
Fernandez, Miguel Angel Luque, Zivich, Paul, Smith, Matthew James
Machine learning methods to investigate segments of the British consumer food market and to predict weight status: Source code. (2020)
Greener, Robert
mquaife/kenya_mixing. (2020)
Quaife, Matthew
Measurement error correction methods applied to NHANES data. (2019)
Keogh, Ruth, Bartlett, Jonathan
Mathematical model projections for: "Application of provincial data in mathematical modelling to inform sub-national tuberculosis program decision-making in South Africa". (2018)
Sumner, Tom
folder_zip
MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018)
Witmer, Kathrin, Sherrard-Smith, Ellie, Straschil, Ursula, Tunnicliff, Mark, Baum, Jake, Delves, Michael
MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies. (2018)
Witmer, Kathrin, Sherrard-Smith, Ellie, Straschil, Ursula, Tunnicliff, Mark, Baum, Jake, Delves, Michael
MI-TVE. (2018)
Keogh, Ruth
migariane/meltmle: Ensemble Learning Targeted Maximum Likelihood Estimation for Stata users. (2017)
Luque, Miguel Angel
Multiple imputation methods for bivariate outcomes in cluster randomised trials: Supporting Information. (2016)
Diaz-ordaz, Karla, Kenward, Mike, Gomes, Manuel, Grieve, Richard
description
P
Projection of temperature-related mortality in 854 European cities under climate change and adaptation scenarios. (2024)
Masselot, Pierre, Mistry, Malcolm N., Gasparrini, Antonio
Projections of COVID-19 epidemics in LMIC countries. (2020)
Pearson, Carl A. B., Van zandvoort, Kevin, Jarvis, Christopher I., Davies, Nicholas G., Thompson, Sam, Checchi, Francesco, Jit, Mark, Eggo, Rosalind M., LSHTM CMMID COVID-19 Working Group
pegas: Population and Evolutionary Genetics Analysis System. (2020)
Paradis, Emmanuel, Kamvar, Zhian N., Jombart, Thibaut, Brian, Knaus, Frederic, Michaud
Probability of a large 2019-nCoV outbreak following introduction of cases. (2020)
Kucharski, Adam J., Russell, Timothy W., Diamond, Charlie, CMMID nCoV working group, Funk, Sebastian, Eggo, Rosalind M.
Poisson Regression Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017)
Marks, Michael, Roberts, Chrissy
description
R
rachaelpung/covid_missed_infections. (2023)
Pung, Rachael
RtD3. (2020)
Gibbs, Hamish, Abbott, Sam, Funk, Sebastian
Reconstructing the global dynamics of unreported COVID-19 cases and infections. (2020)
Russell, Timothy W., Golding, Nick, Hellewell, Joel, Abbott, Sam, Pearson, Carl A B, Van zandvoort, Kevin, Jarvis, Christopher I, Gibbs, Hamish, Liu, Yang, Eggo, Rosalind M., Edmunds, W. John, Kucharski, Adam J., CMMID COVID-19 working group
Real-time analysis of the diphtheria outbreak in forcibly displaced Myanmar nationals in Bangladesh. (2019)
Finger, Flavio, Funk, Sebastian, White, Kate, Siddiqui, M. Ruby, Edmunds, W. John, Kucharski, Adam J.
R Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15". (2019)
Funk, Sebastian
R code: why sensitive bacteria are resistant to hospital infection control. (2017)
van Kleef, Esther, Luangasanatip, Nantasit, Bonten, Marc JM, Cooper, Ben S
R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017)
Marks, Michael, Mitja, Oriol, Fitzpatrick, Christopher, Asiedu, Kingsley, Solomon, Anthony W., Mabey, David, Funk, Sebastian
description
R Code for: "Modelling lagged associations in environmental time series data: a simulation study". (2017)
Gasparrini, Antonio
S
Synthetic datasets of the UK Biobank cohort. (2024)
Gasparrini, Antonio, Vanoli, Jacopo
Stan models for diagnostic tests accuracy simulation; Accompaniment for Journal Article. (2022)
Keddie, Suzanne, Bärenbold, Oliver, Keogh, Ruth, Bradley, John
Software and results for: Incorporating social norms into a configurable agent-based model of commuting behaviour. (2022)
Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven
Software and results for: An agent-based model for simulating the impact of social norms on active commuting interventions. (2021)
Greener, Robert, Lewis, Daniel, Reades, Jon, Miles, Simon, Cummins, Steven
Simulation results for "COVID-19 vaccination in Sindh Province, Pakistan: a modelling study of health impact and cost-effectiveness". (2021)
Pearson, Carl A B, Bozzani, Fiammetta, Procter, Simon R, Davies, Nicholas G, Huda, Maryam, Jensen, Henning Tarp, Keogh-Brown, Marcus, Khalid, Muhammad, Sweeney, Sedona, Torres-Rueda, Sergio, Eggo, Rosalind M, Vassall, Anna, Jit, Mark
skissler/haslemere. (2020)
Kissler, Stephen M., Klepac, Petra, Tang, Maria, Conlan, Andrew J.K., Gog, Julia R.
StefanFlasche/Pneumo_Trans_Inf. (2020)
Flasche, Stefan
SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. (2019)
Thompson, Jennifer
S1 Dataset for "Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak". (2016)
Kucharski, Adam J., Funk, Sebastian, Eggo, Rosalind M., Mallet, Henri-Pierre, Edmunds, W. John, Nilles, Eric J.
description
Source code for analysis of the zoonotic niche of Ebolavirus. (2014)
Pigott, David M, Golding, Nick, Mylne, Adrian, Huang, Zhi, Henry, Andrew J, Weiss, Daniel J, Brady, Oliver J., Kraemer, Moritz UG, Smith, David L, Moyes, Catherine L, Bhatt, Samir, Gething, Peter W, Horby, Peter W, Bogoch, Isaac I, Brownstein, John S, Mekaru, Sumiko R, Tatem, Andrew J, Khan, Kamran, Hay, Simon I
T
tsleng93/SocialBubble: Social Bubble (including density dependence). (2020)
Leng, Trystan, Flasche, Stefan
trendbreaker 0.1.0: Detect Changes in Temporal Trends. (2020)
Jombart, Thibaut, Schumacher, Dirk
thibautjombart/covid19_bed_occupancy: Second major release. (2020)
Jombart, Thibaut, Clifford, Samuel, Pearson, Carl A. B. Pearson, Rees, Eleanor, Nightingale, Emily, Procter, Simon, Knight, Gwen
Tractable Bayesian variable selection: beyond normality. (2017)
Rossell, David, Rubio, Francisco J.
W
Water Supply Interruptions and Suspected Cholera Incidence: A Time-Series Regression in the Democratic Republic of the Congo. S1 Table. (2015)
Jeandron, Aurelie, Saidi, Jaime Mufitini, Kapama, Alois, Burhole, Manu, Birembano, Freddy, Vandevelde, Thierry, Gasparrini, Antonio, Armstrong, Ben, Cairncross, Sandy, Ensink, Jeroen
description
Y
yangclaraliu/covid_surveillance_strategy: WOR Submission. (2020)
Liu, Yang, Gong, Wenfeng, Clifford, Samuel, Sundaram, Maria E, CMMID COVID-19 Working Group, Jit, Mark, Flasche, Stefan, Klepac, Petra