Data capture method
Number of items: 510.
A
A protocol for emulating four published randomised controlled trials using registry data: effects of antibiotics in cystic fibrosis. (2025)
Granger, Emily, Allen, Lorna, Charman, Susan, Clarke, Sarah, Davies, Gwyneth, Frost, Freddy, Plowman, Hannah, Tomlinson, Laurie A., Keogh, Ruth
description
AndriaMousa/SP-resistance-protective-efficacy-code: v1.1. (2025)
Mousa, Andria
ahyoung-lim/Arbo_riskmaps_public. (2025)
Lim, Ahyoung
Appendix files for "Randomised controlled trial of topical combination therapy chlorhexidine 0.2% and natamycin 5% versus topical natamycin 5% alone for fungal keratitis in East Africa". (2025)
Hoffman, Jeremy
picture_as_pdf
AmpliconTyper. (2025)
Spadar, Anton, Mahindroo, Jaspreet, Troman, Catherine, Owusu, Michael, Adu-Sarkodie, Yaw, Abraham, Dilip, Blossom Benny, Govindan, Karthikeyan, Mohan, Venkata Raghava, Dyson, Zoe Anne, Grassly, Nicholas, Holt, Kathryn E.
Additional file 2 of Unsupervised title and abstract screening for systematic review: a retrospective case-study using topic modelling methodology. (2024)
Natukunda, Agnes, Muchene, Leacky K.
A comparison of covariate adjustment approaches under model misspecification in individually randomized trials. (2024)
Tackney, Mia S., Morris, Tim, White, Ian, Leyrat, Clemence, Diaz-Ordaz, Karla, Williamson, Elizabeth
alxsrobert/measles_england_sir. (2024)
Robert, Alexis, Suffel, Anne Marie
APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code. (2024)
Momanyi, Reinpeter Ondeyo, Mugotitsa, Bylhah
amrnet/amrnet: AMRnet-v1.0. (2024)
Cerdeira, Louise, Sharma, Vandana, Maranga, Mary, Carey, Megan, Dyson, Zoe Anne, Holt, Kathryn E.
Annexes to: A Systematic Review to Identify the Effectiveness of Greenhouse Gas Mitigation Interventions for Healthcare Systems in Low- and Middle-Income Countries. (2023)
Blom, Iris
description
aj-clements/Vivli-AMR-KG. (2023)
Knight, Gwenan M, Waterlow, Naomi, Wildfire, Jacob, Clements, Alastair J
Additional file 3 of Assessing the impact of the “malaria supporters project” intervention to malaria control in the Brazilian Amazon: an interrupted time-series analysis. (2023)
Garcia, Klauss Kleydmann Sabino, Soremekun, Seyi, Bottomley, Christian, Abrahão, Amanda Amaral, de Miranda, Cristiano Barreto, Drakeley, Chris, Ramalho, Walter Massa, Siqueira, André M
Assessing the impact of the 2018 Changchun Changsheng vaccine incident on childhood vaccination in China. (2023)
Hou, Zhiyuan, Lai, Xiaozhen, Liu, Yang, Jit, Mark, Larson, Heidi, Hai, Fang
Additional file 1 of Inequalities in the impact of COVID-19-associated disruptions on tuberculosis diagnosis by age and sex in 45 high TB burden countries. (2022)
McQuaid, C. Finn, Henrion, Marc Y. R., Burke, Rachael M., MacPherson, Peter, Nzawa-Soko, Rebecca, Horton, Katherine C.
akira-endo/schooldynamics_FluMatsumoto14-15: Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. (2022)
Endo, Akira, Uchida, Mitsuo, Liu, Yang, Atkins, Katherine E., Kucharski, Adam J., Funk, Sebastian
Additional file 2 of Cluster randomised trials with a binary outcome and a small number of clusters: comparison of individual and cluster level analysis method. (2022)
Thompson, Jennifer A., Leyrat, Clemence, Fielding, Katherine L., Hayes, Richard J.
ARUKCFE/BmiAlgorithm. (2022)
Kopec-Harding, Kamilla, Costello, Ruth
akira-endo/Intro-PMCMC. (2022)
Endo, Akira, Van leeuwen, Edwin, Jomaba, M
akira-endo/monkeypox_heavytail: Heavy-tailed sexual contact networks and the epidemiology of monkeypox outbreak in non-endemic regions. (2022)
Endo, Akira, Murayama, Hiroaki, Abbott, Sam, Ratnayake, Ruwan, Pearson, Carl A. B., Edmunds, W. John, Fearon, Elizabeth, Funk, Sebastian
ALPHA HIV Incidence and Mortality Data, Kisesa 1994-2016. (2022)
Kisesa HIV Open Cohort study, ALPHA Network
Additional Data and Code from "Increased energy use for adaptation significantly impacts mitigation pathways". (2022)
Colelli, Francesco Pietro, Emmerling, Johannes, Mistry, Malcolm, Marangoni, Giacomo, De Cian, Enrica
Additional file 1 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022)
Morris, Tim P., Walker, A. Sarah, Williamson, Elizabeth J., White, Ian R.
Additional file 2 of Planning a method for covariate adjustment in individually randomised trials: a practical guide. (2022)
Morris, Tim P., Walker, A. Sarah, Williamson, Elizabeth J., White, Ian R.
Additional file 1 of Locating and testing the healthy context paradox: examples from the INCLUSIVE trial. (2022)
Melendez-Torres, G. J., Warren, Emily, Ukoumunne, Obioha C, Viner, Russell, Bonell, Chris
AntonS-bio/entropy. (2022)
Spadar, Anton
Analysis of non-communicable disease reports contributing to UN high-level meeting process (2000-2020). (2021)
Millington, James, Okpako, Oritsematosan, Herrick, Clare
Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts. (2021)
Courtin, Emilie, Greener, Robert, Weiss, Jordan, Ware, Erin B., Dowd, Jennifer B., Rehkopf, David
Additional file 1 of A framework for handling missing accelerometer outcome data in trials. (2021)
Tackney, Mia S., Cook, Derek G., Stahl, Daniel, Ismail, Khalida, Williamson, Elizabeth, Carpenter, James
Additional file 2 of Comparative diagnostic accuracy studies with an imperfect reference standard – a comparison of correction methods. (2021)
Umemneku Chikere, Chinyereugo M, Wilson, Kevin J, Allen, A Joy, Vale, Luke
Additional file 2 of Complex emergencies and the control and elimination of neglected tropical diseases in Africa: developing a practical approach for implementing safe and effective mapping and intervention strategies. (2021)
Kelly-Hope, Louise A., Sanders, Angelia M., Harding-Esch, Emma, Willems, Johan, Ahmed, Fatima, Vincer, Fiona, Hill, Rebecca
A Comparison of Different Community Models of ART Delivery Amongst Stable HIV+ Patients in two Urban Settings in Zambia - Study Protocol. (2021)
Limbada, Mohammed, Ayles, Helen, Macleod, David
picture_as_pdf
akira-endo/COVID19_backwardtracing. (2020)
Endo, Akira, Kucharski, Adam J.
adegenet: Exploratory Analysis of Genetic and Genomic Data. (2020)
Jombart, Thibaut, Kamvar, Zhian N., Collins, Caitlin, Luštrik, Roman, Beugin, Marie-Pauline, Knaus, Brian J, Solymos, Peter, Mikryukov, Vladimir, Schliep, Klaus, Maié, Tiago, Morkovsky, Libor, Ahmed, Ismail, Cori, Anne, Calboli, Federico, Ewing, RJ, Michaud, Frédéric, DeCamp, Rebecca, Courtiol, Alexandre
Anonymised data for: "Predictors of change of health workers’ knowledge and skills after the Helping Mothers Survive Bleeding after Birth (HMS BAB) in-facility training in Tanzania". (2020)
Alwy Al-beity, Fadhlun, Pembe, Andrea Barnabas, Marrone, Gaetano, Baker, Ulrika, Hanson, Claudia
akira-endo/COVID19_clustersize: Estimating the amount of superspreading using outbreak sizes of COVID-19 outside China. (2020)
Endo, Akira, Abbott, Sam, Kucharski, Adam J., Funk, Sebastian
An experimental investigation of social preferences, their determinants and their role in the labour supply function. (2019)
Smith, Richard
anastasiachtz/COMMAND_stan/. (2019)
Chatzilena, Anastasia, Van Leeuwen, Edwin
A High-Resolution (0.25 degree) Historical Global Gridded Dataset of Climate Extreme Indices (1970-2016) using GLDAS data. (2019)
Mistry, Malcolm Noshir
Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. (2016)
Karat, Aaron S., Omar, Tanvier, von Gottberg, Anne, Tlali, Mpho, Chihota, Violet N., Churchyard, Gavin J., Fielding, Katherine L., Johnson, Suzanne, Martinson, Neil A., McCarthy, Kerrigan, Wolter, Nicole, Wong, Emily B., Charalambous, Salome, Grant, Alison D.
description
Additional file 2: of Quantification of the natural history of visceral leishmaniasis and consequences for control. (2015)
Chapman, Lloyd A C, Dyson, Louise, Courtenay, Orin, Chowdhury, Rajib, Bern, Caryn, Medley, Graham, Hollingsworth, T. Deirdre
description
A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. (2009)
Perkins, Timothy T., Kingsley, Robert A., Fookes, Maria C., Gardner, Paul P., James, Keith D., Yu, Lu, Assefa, Samuel A., He, Miao, Croucher, Nicholas J., Pickard, Derek J., Maskell, Duncan J., Parkhill, Julian, Choudhary, Jyoti, Thomson, Nicholas R., Dougan, Gordon
A HaemAtlas: characterizing gene expression in differentiated human blood cells. (2009)
Watkins, Nicholas A, Gusnanto, Arief, de Bono, Bernard, De, Subhajyoti, Miranda-Saavedra, Diego, Hardie, Debbie L, Angenent, Will G. J., Attwood, Antony P, Ellis, Peter D, Erber, Wendy, Foad, Nicola S, Garner, Stephen F, Isacke, Clare M, Jolley, Jennifer, Koch, Kerstin, Macaulay, Iain C, Morley, Sarah L, Rendon, Augusto, Rice, Kate M, Taylor, Niall, Thijssen-Timmer, Daphne C, Tijssen, Marloes R, van der Schoot, C. Ellen, Wernisch, Lorenz, Winzer, Thilo, Dudbridge, Frank, Buckley, Christopher D, Langford, Cordelia F, Teichmann, Sarah, Göttgens, Berthold, Ouwehand, Willem H
B
Baselines_Application_Data. (2025)
Stapper, Manuel
bokern/ics_covid. (2024)
Bokern, Marleen
BronnerG/Hosp_Vacc_analysis: v1. (2023)
Gonçalves, Bronner P.
Bisaloo/asymptor. (2022)
Gruson, Hugo, actions-user
Biometric linkage of longitudinally collected electronic case report forms and confirmation of subject identity: An open framework for Open Data Kit (ODK) and related tools. (2022)
Roberts, Chrissy, Stott, Callum, Lal, Sham, Marks, Michael, Shawe-Taylor, Marianne, Chaudhry, Zain
folder_zip
BayesSUR: Bayesian Seemingly Unrelated Regression. (2021)
Banterle, Marco, Zhao, Zhi, Bottolo, Leonardo, Richardson, Sylvia, Leoncio, Waldir, Lewin, Alexandra, Zucknick, Manuela, Zhao, Zhi
BugBunny/Pathways_to_Low_Fertility. (2021)
Timaeus, Ian
BlantyreTBEpi. (2018)
MacPherson, Peter, Khundi, McEwen, Nliwasa, Marriott, Choko, Augustine T., Phiri, Vincent K., Webb, Emily L., Dodd, Peter J., Cohen, Ted, Harris, Rebecca, Corbett, Elizabeth L.
C
Contagent. (2025)
Greener, Robert Alexander
cmmid/comix_mobility. (2025)
Prestige, Em
Code for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2025)
Jelmar Sietsma, Anne, Nájera Espinosa, Sarah
ciarajudge/EpiFusion. (2024)
Judge, Ciara
ciarajudge/EpiFusion_PublicationRepo. (2024)
Judge, Ciara
cleanepi: Clean and Standardize Epidemiological Data. (2024)
Mané, Karim, Jombart, Thibaut, Bah, Bubacarr, Ahadzie, Bankolé, Mohammed, Nuredin, Degoot, Abdoelnaser M., Gruson, Hugo, Gupte, Pratik R., Azam, James M., Lambert, Joshua W., Hartgerink, Chris
cfr: Estimate Disease Severity and Case Ascertainment. (2024)
Gupte, Pratik R., Kucharski, Adam J., Russell, Timothy W., Lambert, Joshua W., Gruson, Hugo, Taylor, Tim, Azam, James M., Degoot, Abdoelnaser M., Funk, Sebastian
cmmid/covidm_reports: HEA Snapshot. (2023)
Pearson, Carl A. B., Thompson, Sam, Van Zandvoort, Kevin, Eggo, Rosalind M., Jarvis, Christopher I.
cmmid/SA2UK: CEA submission. (2022)
Pearson, Carl A. B., Russell, Timothy W., Kucharski, Adam J.
Code: Evaluation of age-specific causes of death in the context of the Italian longevity transition. (2022)
Nigri, Andrea, Aburto, José Manuel, Basellini, Ugofilippo, Bonetti, Marco
cgaim: Constrained Groupwise Additive Index Models. (2022)
Masselot, Pierre
chrissyhroberts/OMR_LSHTM. (2022)
Roberts, Chrissy
Code to replicate "Quantifying impacts of the COVID-19 pandemic through life expectancy losses". (2021)
Aburto, José Manuel, Schöley, Jonas, Kashnitsky, Ilya, Knowles, Ian, Zhang, Luyin, Rahal, Charles, Missov, Trifon I, Dowd, Jennifer B, Mills, Melinda C, Kashyap, Ridhi
CSV-format data for: Increased mortality in community-tested cases of SARS-CoV-2 lineage B.1.1.7. (2021)
Davies, Nicholas G.
CoMix social contact data (UK). (2021)
Gimma, Amy, Wong, Kerry LM, Van Xandvoort, Kevin, Jarvis, Christopher I., Edmunds, W. John
CEmimix ADO file. (2021)
Leurent, Baptiste, Cro, Suzie
cmmid/SA2UK. (2021)
Pearson, Carl A. B., Russell, Timothy W., Kucharski, Adam J.
Crimean-congo haemorrhagic fever virus detected in Rhipicephalus ticks feeding on cattle in an abattoir, Uganda. (2020)
Stubbs, Sam
COVID-SCORE: A global survey to assess public perceptions of government responses to COVID-19 (COVID-SCORE-10). (2020)
Lazarus, Jeffrey V., Ratzan, Scott, Palayew, Adam, Billari, Francesco C., Binagwaho, Agnes, Kimball, Spencer, Larson, Heidi J., Melegaro, Alessia, Rabin, Kenneth, White, Trenton M., El-Mohandes, Ayman
Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study. (2020)
Thompson, Jennifer
CLAN: Stata module to perform cluster-level analysis of cluster randomised trials. (2020)
Nash, Stephen, Thompson, Jennifer, Leurent, Baptiste
cmmid/ringbp. (2020)
Hellewell, Joel
Code for simulating release of Wolbachia mosquitoes in Indonesia and assessing their cost effectiveness in different places over time. (2019)
Brady, Oliver J., Bastos, Leonardo
convertCMC: Convert century month codes to Stata dates. (2019)
Timaeus, Ian
CSFLAM_data set revised. (2019)
Kwizera, Richard, Cresswell, Fiona V., Mugumya, Gerald, Okirwoth, Micheal, Kagimu, Enock, Bangdiwala, Ananta S., Williams, Darlisha A., Rhein, Joshua, Boulware, David R., Meya, David B.
CEmimix Stata do-file - First version. (2019)
Leurent, Baptiste, Gomes, Manuel, Cro, Suzie, Wiles, Nicola, Carpenter, James R.
Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". (2018)
Knight, Gwen
Comparison of different approaches for estimating age-specific alcohol-attributable mortality: The cases of France and Finland. (2018)
Trias-Llimós, Sergi, Martikainen, Pekka, Mäkelä, Pia, Janssen, Fanny
CMATCH: Stata module to tabulate matched pairs in 1:1 case control study by exposure status. (2017)
Fernandez, Miguel Angel Luque
CVAUROC: Stata module to compute Cross-validated Area Under the Curve for ROC Analysis after Predictive Modelling for Binary Outcomes. (2017)
Luque, Miguel Angel, Maringe, Camille, Nelson, Paul
Children with Moderate Acute Malnutrition with No Access to Supplementary Feeding Programmes Experience High Rates of Deterioration and No Improvement: Results from a Prospective Cohort Study in Rural Ethiopia. (2016)
James, Philip, Sadler, Kate, Wondafrash, Mekitie, Argaw, Alemayehu, Luo, Hanqi, Geleta, Benti, Kedir, Kiya, Getnet, Yilak, Belachew, Tefera, Bahwere, Paluku
Clinical and Health Outcomes Knowledge Base. (2007)
Lakhani, A, Olearnik, H, Eayres, D
D
Data and R code to accompany 'Compound and cascading effects of climatic extremes on dengue outbreak risk in the Caribbean: an impact-based modelling framework with long-lag and short-lag interactions'. (2025)
Fletcher, Chloe, Moirano, Giovenale, Alcayna, Tilly, Rollock, Leslie, Van Meerbeeck, Cédric J, Mahon, Roche, Trotman, Adrian, Boodram, Laura-Lee, Browne, Tia, Best, Sabu, Lührsen, Daniela, Díaz, Avriel R, Dunbar, Willy, Lippi, Catherine A, Ryan, Sadie J, Colón-González, Felipe J, Stewart-Ibarra, Anna M, Lowe, Rachel
Data Analysis Plan for Event (Heatwave and High Air Pollution) and Non-Event (Average Temperature and Moderate/Good Air Quality) Survey. (2025)
Bwire, Constance, Hughes, Robert, Milner, James, Yeung, Shunmay, Bonell, Ana, Bonnet, Gabrielle
description
Data and R-code to accompany 'Modelling the impact of climate and the environment on the spatiotemporal dynamics of Lyme borreliosis in Germany'. (2025)
Lotto Batista, Martín, Carvalho, Bruno, Gibb, Rory, Solaraju-Murali, Balakrishnan, Flasche, Stefan, Castell, Stefanie, Ghozzi, Stéphane, Lowe, Rachel
Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever". (2025)
Lim, Ahyoung, Brady, Oliver J.
DAISIEmainland. (2024)
Lambert, Joshua W., Bilderbeek, Richèl, Santos Neves, Pedro
Data for: "Cluster-randomised trial of digital adherence technology interventions to reduce poor end-of-treatment outcomes and recurrence among adults with drug-sensitive tuberculosis in Ethiopia". (2024)
Fielding, Katherine, Tadesse, Amare W.
description
Data for: "Differentiated HIV care cascade for youth in Zimbabwe". (2024)
Simms, Victoria, Dziva Chikwari, Chido, Ferrand, Rashida, Bandason, Tsitsi
description
DidDrog11/data_for_gbif: Final version for Gigabyte. (2023)
Simons, David
DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction. (2023)
Etienne, Rampal S., Valente, Luis, Phillimore, Albert B., Haegeman, Bart, Lambert, Joshua W., Santos Neves, Pedro, Xie, Shu, Bilderbeek, Richèl J.C., Hildenbrandt, Hanno, Hauffe, Torsten, Laudanno, Giovanni, Kristensen, Nadiah, Scherrer, Raphael
Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe. (2023)
Burkhart Colorado, Angela Sofia, Lazzaro, Alessandro, Preston, Charles, Nusbacher, Nichole, Boyd, Kathryn, Fiorillo, Suzanne, Martin, Casey, Siebert, Janet, Campbell, Thomas
drwariri/Mapping-the-timeliness-of-routine-childhood-vaccination-in-The-Gambia-a-spatial-modelling-study. (2023)
Wariri, Oghenebrume
DidDrog11/arenavirus_hantavirus_app. (2023)
Simons, David
Data and R-code to accompany 'Towards an Early Warning System for Leptospirosis in North-Eastern Argentina'. (2023)
Lotto Batista, Martín, Rees, Eleanor M., Gómez, Andrea, López, Soledad, Castell, Stefanie, Kucharski, Adam J., Ghozzi, Stéphane, Müller, Gabriela V, Lowe, Rachel
deusthindwa/ optimal.age.targeting.pneumo.vaccines: OptionaAgeTargetingPneumococcalVaccines. (2023)
Thindwa, Deus, Clifford, Samuel
Data Management for MSc Summer Projects. (2023)
Knight, Gareth, LSHTM Library, Archive & Open Research Services
dchodge/nambcea. (2022)
Hodgson, David
DidDrog11/lassa_underreporting. (2022)
Simons, David
Duration of protection of CoronaVac plus heterologous BNT162b2 booster in the Omicron period in Brazil. (2022)
Cerqueira-Silva, Thiago, de Araujo Oliveira, Vinicius, Paixão, Enny S., Júnior, Juracy Bertoldo, Penna, Gerson O., Werneck, Guilherme L., Pearce, Neil, Barreto, Maurício L., Boaventura, Viviane S., Barral-Netto, Manoel
dchodge/hero-study: Version submitted with WOR reviewers comments. (2022)
Hodgson, David, Abbott, Sam
Dataset used in the assessment of the article "Basic urban services fail to neutralise environmental determinants of 'rattiness', a composite metric of rat abundance". (2022)
Carvalho-Pereira, Ticiana, Eyre, Max T, Zeppelini, Caio G, Espirito Santo, Vivian F, Santiago, Diogo C, Santana, Roberta, Palma, Fabiana, Reis, Marbrisa, Lustosa, Ricardo, Khalil, Hussein, Diggle, Peter J, Giorgi, Emanuele, Costa, Federico, Begon, Michael
Decision Modelling for Health Economic Evaluation R Code. (2021)
Williams, Jack, Naylor, Nichola, Briggs, Andrew
d-mayerova/Vaccine_confidence_Albania. (2021)
Mayerová, Daniela, Abbas, Kaja M.
Data for: "Foot thermometry with mHeath-based supplementation to prevent diabetic foot ulcers: A randomized controlled trial". (2020)
Lazo-Porras, Maria, Bernabe-Ortiz, Antonio, Taype-Rondan, Alvaro, Gilman, Robert H., Malaga, German, Manrique, Helard, Neyra, Luis, Calderon, Jorge, Pinto, Miguel, Armstrong, David G., Montori, Victor M., Miranda, J. Jaime
Detection of a novel insect-specific flavivirus across ecologically diverse populations of Aedes aegypti on the Caribbean Island of Saint Lucia. (2020)
Walker, Thomas, Jeffries, Claire L., Yakob, Laith, White, Mia, Wilson, Louisia
denvax: Simple Dengue Test and Vaccinate Cost Thresholds. (2019)
Pearson, Carl, Abbas, Kaja M., Clifford, Samuel, Flasche, Stefan, Hladish, Thomas J.
Data from: Process evaluation of a national primary eye care programme in Rwanda. (2018)
Yip, Jennifer L. Y., Bright, Tess, Ford, Sebastian, Mathenge, Wanjiku, Faal, Hannah
DREAMS baseline study in young men aged 20-29 years in rural KwaZulu Natal, South Africa, 2006-2015. (2018)
Herbst, Kobus, Pillay, Deenan, Baisley, Kathy, Barnighausen, Till, Koole, Olivier
dlnm: Distributed Lag Non-Linear Models. (2017)
Gasparrini, Antonio, Armstrong, Ben, Scheipl, Fabian
Data from: Transmission of multidrug-resistant and drug-susceptible tuberculosis within households: a prospective cohort study. (2015)
Grandjean, Louis, Gilman, Robert H., Martin, Laura, Soto, Esther, Castro, Beatriz, Lopez, Sonia, Coronel, Jorge, Castillo, Edith, Alarcon, Valentina, Lopez, Virginia, San Miguel, Angela, Quispe, Neyda, Asencios, Luis, Dye, Christopher, Moore, David
Data from: Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. (2015)
Messenger, Louisa, Garcia, Lineth, Vanhove, Mathieu, Huaranca, Carlos, Bustamante, Marinely, Torrico, Marycruz, Torrico, Faustino, Miles, Michael, Llewellyn, Martin
Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data. (2015)
Vehkala, Minna, Shubin, Mikhail, Connor, Thomas R, Thomson, Nick, Corander, Jukka
folder_zip
Data from: Clarifying life lost due to cold and heat: a new approach using annual time series. (2014)
Rehill, Nirandeep, Armstrong, Ben, Wilkinson, Paul
grid_on
Droplet Digital PCR (ddPCR) data analysis scripts. (2012)
Roberts, Chrissy
folder_zip
DATACHECK: Stata module to perform data checks and produce informative output. (2011)
Bhaskaran, Krishnan
DNAPlotter: circular and linear interactive genome visualization. (2009)
Carver, Tim, Thomson, Nick, Bleasby, Alan, Berriman, Matthew, Parkhill, Julian
E
epinowcast/baselinenowcast-paper. (2025)
Johnson, Kaitlyn E., Abbott, Sam, Bracher, Johannes
esnightingale/vl-spatial-diagnosis-delay. (2025)
Nightingale, Emily
epiverse-trace/tutorials-late. (2025)
Campos, Andree Valle, Minter, Amanda, Gruson, Hugo, Degoot, Abdoelnaser M., Gupte, Pratik, Hartgerink, Chris, Azam, James M.
epiforecasts/eval-by-method. (2025)
Sherratt, Katharine, Funk, Sebastian
ecthomson/Contamination-Filter. (2025)
Thomson, Emma C.
ecthomson/Contamination-Phylogeny. (2025)
Thomson, Emma C.
epinowcast/epidist. (2025)
Abbott, Sam, Howes, Adam, Park, Sang Woo, Funk, Sebastian, Bayer, Damon, DeWitt, Michael
ecthomson/AFI. (2024)
Thomson, Emma C.
enilles1/DR-Leptospirosis. (2024)
Nilles, Eric J., Rees, Eleanor
epiparameterDB: Database of Epidemiological Parameters. (2024)
Lambert, Joshua W., Kucharski, Adam J., Tamayo, Carmen
epichains: Simulating and Analysing Transmission Chain Statistics Using Branching Process Models. (2024)
Azam, James M., Funk, Sebastian, Finger, Flavio, Kamvar, Zhian N., Gruson, Hugo, Mané, Karim, Gupte, Pratik, Lambert, Joshua W.
esnightingale/vl-disaggregation. (2024)
Nightingale, Emily
EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters. (2024)
Abbott, Sam, Hellewell, Joel, Sherratt, Katharine, Gostic, Katelyn, Hickson, Joe, Badr, Hamada S., DeWitt, Michael, Azam, James M., EpiForecasts, Funk, Sebastian
emilycfivian/Intersectionality-in-NSA-interventions-Analytical-code. (2024)
Fivian, Emily
epiverse-trace/serofoi. (2024)
Domínguez, Nicolás Torres, Gruson, Hugo, Pavlich-Mariscal, Jaime, Gomez, Geraldine, Gámez López, Miguel Enrique, Cucunubá, Zulma M., tracelac, Hartgerink, Chris, Azam, James, ben18785
ehm-lab/hipmapp: Health Impact Projections Shiny App and Data. (2024)
De la cruz Libardi, Arturo
epiforecasts/multi-model-information: Publication release. (2024)
Sherratt, Katharine, Funk, Sebastian
ehr-lshtm/code-sharing: published_article. (2024)
Schultze, Anna, Tazare, John
emmahodcroft/ncov_2021: Release for Geneva Manuscript. (2024)
Hodcroft, Emma, Zuber, Moira, Harkins, Elias, Neher, Richard, Wagner, Cassia, Huddleston, John, Bedford, Trevor, Moncla, Louise H, Hadfield, James, fzhang12, Sibley, Thomas, Saleh, Ahmad, falnaji, Xueying, aniafijarczyk, Nezu, Tomoyuki, Müller, Nicola Felix, Gall, Astrid, Brito, Anderson, Villabona Arenas, Ch. Julian, Bell, Sidney, Kozyreva, Varvara, Eren, Puller, Vadim, Han, Alvin X., irak, Rimaz, Hossein, Ghafari, Mahan, Sato, Takeshi, Lee, Hanbin
epiverse-trace/simulist. (2024)
Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Tamayo Cuartero, Carmen
epidemery/subclinical_transmission. (2023)
Emery, Jon C, Dodd, Peter J, Banu, Sayera, Frascella, Beatrice, Garden, Frances L, Horton, Katherine C, Hossain, Shahed, Law, Irwin, van Leth, Frank, Marks, Guy B, Nguyen, Hoa Binh, Nguyen, Hai Viet, Onozaki, Ikushi, Quelapio, Maria Imelda D, Richards, Alexandra S, Shaikh, Nabila, Tiemersma, Edine W, White, Richard G, Zaman, Khalequ, Cobelens, Frank, Houben, Rein MGJ
epiforecasts/ringbp. (2023)
Abbott, Sam, Hellewell, Joel, Lucas, Tim, Funk, Sebastian, Gimma, Amy
epiverse-trace/vaccineff: vaccineff 0.0.1. (2023)
Quevedo, David Santiago, Gupte, Pratik, Gomez, Geraldine, Gruson, Hugo, Hartgerink, Chris, tracelac, Cucunubá, Zulma M.
epiverse-trace/epiparameter. (2023)
Lambert, Joshua, Gruson, Hugo, Kucharski, Adam J., Gupte, Pratik, Salmon, Maëlle, Campos, Andree Valle, Monticone, Pietro
epiforecasts/transformation-forecast-evaluation. (2023)
Bosse, Nikos, Bracher, Johannes, Abbott, Sam, Funk, Sebastian
Eyedeet/vaccine_methods_ehr_public/. (2023)
Suffel, Anne Marie
Effectiveness of BNT162b2 and ChAdOx1 against SARS-CoV-2 household transmission. (2023)
Clifford, Samuel, Hackman, Jada
epiforecasts/covid.german.forecasts. (2022)
Bosse, Nikos, Abbott, Sam, Funk, Sebastian
epiforecasts/simplified-forecaster-evaluation. (2022)
Abbott, Sam, Bosse, Nikos
Estimating national-level measles case–fatality ratios in low-income and middle-income countries: an updated systematic review and modelling study. (2022)
Sbarra, Alyssa N., Mosser, Jonathan F, Jit, Mark, Ferrari, Matthew, Ramshaw, Rebecca E., O'Connor, Patrick, Krause, L Kendall, Rogowski, Emma LB, Portnoy, Allison
epiverse-trace/blueprints: 0.0.2. (2022)
Jombart, Thibaut, actions-user, Gruson, Hugo, Pavlich-Mariscal, Jaime
emiliecourtin/maternityleave. (2022)
Courtin, Emilie
epiforecasts/scoringutils. (2022)
Bosse, Nikos, Abbott, Sam, Reich, Nicholas G, Funk, Sebastian
epiverse-trace/linelist. (2022)
Jombart, Thibaut
erees/leptoSerology. (2022)
Rees, Eleanor
epiforecasts/covid19-hospital-activity. (2022)
Meakin, Sophie, Abbott, Sam
esnightingale/covid_deaths_spatial. (2022)
Nightingale, Emily
emilyherrett/qrisk_cprd_aurum: QRISK Aurum bundle version 2.0. (2022)
Davidson, Jennifer, Herrett, Emily, Strongman, Helen, Gadd, Sarah
Extended Data: Iron supplementation of breastfed Gambian infants from 6 weeks to 6 months of age: Protocol for a randomised controlled trial. (2021)
Stelle, Isabella, Bah, Mamadou, Silverio, Sergio A., Verhoef, Hans, Comma, Ebrima, Prentice, Andrew M., Moore, Sophie E., Cerami, Carla
epiforecasts/epinowcast. (2021)
Abbott, Sam, Monticone, Pietro
Eyedeet/Systematic_review. (2021)
Suffel, Anne Marie
Every Newborn INDEPTH (EN-INDEPTH) Study - Additional Materials. (2020)
Lawn, Joy E., Waiswa, Peter, Waiswa, Joseph Akuze, Kwesiga, Doris, Blencowe, Hannah, Baschieri, Angela, Gordeev, Vladimir S., EN-INDEPTH Collaborator Group
grid_on
extended data for protocol. (2019)
Sabherwal, Shalinder
Engagement in agricultural work is associated with reduced leisure time among Agta hunter-gatherers. (2019)
Dyble, Mark, Thorley, Jack, Page, Abigail E., Smith, Daniel, Migliano, Andrea Bamberg
EN-BIRTH Data Collection Tools. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
EN-BIRTH Data Collector Training - Handbook and Manual. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
EN-BIRTH Data Collector Training - Supporting Annexes. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah, Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
EN-BIRTH Data Collector Training – Training Module material. (2018)
Day, Louise Tina, Ruysen, Harriet, Gordeev, Vladimir S., Gore-langton, Georgia R., Boggs, Dorothy, Cousens, Simon, Moxon, Sarah G., Blencowe, Hannah, Baschieri, Angela, Rahman, Ahmed Ehsanur, Tahsina, Tazeen, Zaman, Sojib Bin, Hossain, Tanvir, Rahman, Qazi Sadeq-ur, Ameen, Shafiqul, Arifeen, Shams El, KC, Ashish, Shrestha, Shree Krishna, KC, Naresh P., Singh, Dela, Jha, Anjani Kumar, Jha, Bijay, Rana, Nisha, Basnet, Omkar, Joshi, Elisha, Paudel, Asmita, Shrestha, Parashu Ram, Jha, Deepak, Bastola, Ram Chandra, Ghimire, Jagat Jeevan, Paudel, Rajendra, Salim, Nahya, Shamba, Donat, Manji, Karim, Shabani, Josephine, Shirima, Kizito, Mkopi, Namala, Mrisho, Mwifadhi, Manzi, Fatuma, Jaribu, Jennie, Kija, Edward, Assenga, Evelyne, Kisenge, Rodrick, Pembe, Andrea, Hanson, Claudia, Mbaruku, Godfrey, Masanja, Honorati, Lawn, Joy E.
ELISA Plate Washer. (2018)
Roberts, Chrissy
description
Effect of paying for performance on utilisation, quality, and user costs of health services in Tanzania: a controlled before and after study. (2015)
Binyaruka, Peter, Patouillard, Edith, Powell-jackson, Timothy, Greco, Giulia, Maestad, Ottar, Borghi, Josephine
description
EPrints Geographic Location plugin. (2015)
Jennings, Simon, McNicholl, Rory
folder_zip
Evaluation of WaterAid sanitation in Odisha, India (Household Baseline) (June 2015). (2015)
Clasen, Thomas
Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. (2013)
Fielding, Katherine, Lewis, James, Jiang, Shiwen
Eyescores - Electronic Data Capture and photographic evidence collection platform for biological field studies. (2012)
Roberts, Chrissy, Mtuy, Tara, Derrick, Tamsyn, Burton, Matthew, Holland, Martin
Ethnicity and Economic Activity: Longitudinal Perspectives, 1971-2006. (2010)
Grundy, Emily
F
Food Environment Evidence Directory (FEED) Map. (2024)
Juel, Rachel, Dasaraju, Aparna, Newbould, Rebecca
html
fkrauer/RSV-VACC-DE. (2024)
Krauer, Fabienne
finalsize: Calculate the Final Size of an Epidemic. (2024)
Gupte, Pratik, Van Leeuwen, Edwin, Kucharski, Adam, Eggo, Rosalind M., Gruson, Hugo, Jombart, Thibaut, Valle Campos, Andree, Lambert, Joshua W.
francescochecchi/yem_diaspora_mortality. (2023)
Checchi, Francesco
fionagi/GASImpactModel. (2023)
Giannini, Fiona, Abbas, Kaja
fundiversity: Easy Computation of Functional Diversity Indices. (2022)
Gruson, Hugo, Grenié, Matthias
francescochecchi/acute_malnutrition_predictive_models. (2022)
Checchi, Francesco, Frison, Severine, Warsame, Abdihamid
francescochecchi/mortality_capture_recapture_analysis. (2022)
Checchi, Francesco
fkrauer/RSV-seasonality-public. (2022)
Krauer, Fabienne
Female Genital Schistosomiasis - Medical Training Device. (2022)
Roberts, Chrissy, Bustinduy, Amaya
FJRubio67/LBANS/. (2022)
Eletti, Alessia, Marra, Giampiero, Quaresma, Manuela, Radice, Roslaba, Rubio, Francisco J
francesccoll/powerbacgwas. (2022)
Coll, Francesc
Female Reproductive System. (2020)
Roberts, Chrissy
FluMoDL: Influenza-Attributable Mortality with Distributed-Lag Models. (2019)
Lytras, Theodore, Gasparrini, Antonio, Wang, Shuangcai
Farafenni INDEPTH Core Dataset 1982-2015 (Release 2018). (2018)
Jasseh, Momodou, D'Alessandro, Umberto, Dondeh, Bai Lamin
FPC Grader. (2017)
Roberts, Chrissy
G
gigs: Assess Fetal, Newborn, and Child Growth with International Standards. (2025)
Parker, Simon R, Ohuma, Eric O., Vesel, Linda
ghr/wnv_casecrossover. (2024)
Moirano, Giovenale, Fletcher, Chloe, Semenza, Jan C., Lowe, Rachel
gasparrini/UK-HWfcast. (2024)
Mistry, Malcolm, Gasparrini, Antonio
gwenknight/ecdc_data_age_sex. (2024)
Waterlow, Naomi, Knight, Gwen
grahams99/Health-seeking-behaviour. (2023)
Graham, Sophie
grahams99/Enhanced_surveillance_questionnaire. (2023)
Graham, Sophie
gasparrini/MCC-SO2. (2023)
Gasparrini, Antonio
google-research/proteinfer. (2023)
Sanderson, Theo, Bileschi, Maxwell, Belanger, David
GaryNapier/spolpred. (2023)
Napier, Gary
GaryNapier/comp_mut. (2022)
Napier, Gary
gwenknight/strain_growth. (2022)
Knight, Gwen, Baede, Valérie O.
Genome details for the simulated-read tests. (2022)
Wick, Ryan R., Holt, Kathryn E.
gwenknight/hai_first_wave. (2021)
Knight, Gwen
gasparrini/2017_lopezbernal_IJE_codedata. (2020)
Lopez-Bernal, James, Cummins, Steven, Gasparrini, Antonio
gasparrini/2019_armstrong_EHP_Rcodedata. (2019)
Gasparrini, Antonio
gwenknight/empiricprescribing. (2019)
Knight, Gwen
gasparrini/2014_gasparrini_BMCmrm_Rcodedata. (2017)
Gasparrini, Antonio, Leone, Michela
Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity: Supplementary data. (2015)
Mobegi, Victor, Duffy, Craig, Amambua-Ngwa, Alfred, Loua, Kovana M, Laman, Eugene, Nwakanma, Davis C, MacInnis, Bronwyn, Aspeling-jones, Harvey, Murray, Lee, Clark, Taane, Kwiatkowski, Dominic P, Conway, David
grid_on
H
hstrongman/OSA-narc_CPRD_validation. (2025)
Strongman, Helen
Health facility assessment of small and sick newborn care in low- and middle-income countries: systematic tool development and operationalisation with NEST360 and UNICEF. (2024)
Penzias, Rebecca E., Bohne, Christine, Ngwala, Samuel K., Zimba, Evelyn, Lufesi, Norman, Rashid, Ekran, Gicheha, Edith, Odedere, Opeyemi, Dosunmu, Olabisi, Tillya, Robert, Shabani, Josephine, Cross, James H., Liaghati-Mobarhan, Sara, Chiume, Msandeni, Banda, George, Chalira, Alfred, Wainaina, John, Gathara, David, Irimu, Grace, Adudans, Steve, James, Femi, Tongo, Olukemi, Ezeaka, Veronica Chinyere, Msemo, Georgina, Salim, Nahya, Day, Louise T., Powell-Jackson, Timothy, Chandna, Jaya, Majamanda, Maureen, Molyneux, Elizabeth M., Oden, Maria, Richards-Kortum, Rebecca, Ohuma, Eric O., Paton, Chris, Hailegabriel, Tedbabe, Gupta, Gagan, Lawn, Joy E.
hendersonad/2020_multimorbidity. (2022)
Henderson, Alasdair
hamishgibbs/facebook_population_2020_2021. (2022)
Gibbs, Hamish, Waterlow, Naomi R., Cheshire, James, Danon, Leon, Liu, Yang, Grundy, Chris, Kucharski, Adam J., Eggo, Rosalind M.
hamishgibbs/ghana_rt_npi_mobility. (2021)
Gibbs, Hamish
Healthcare use by people who use illicit opioids (HUPIO): development of a cohort based on electronic primary care records in England (extended data). (2021)
Lewer, Dan, Padmanathan, Prianka, Arfeen, Muhammad Najam Ul, Denaxas, Spiros, Forbes, Harriet, Gonzalez-Izquierdo, Arturo, Hickman, Matt
Household air pollution in Nairobi's slums: A long-term policy evaluation using participatory system dynamics. (2019)
Dianati, K., Zimmermann, N., Milner, James, Muindi, K., Ezeh, A., Chege, M., Mberu, B., Kyobutungi, C., Fletcher, H., Wilkinson, P., Davies, M.
Herpes Zoster Vaccine Effectiveness against Incident Herpes Zoster and Post-herpetic Neuralgia in an Older US Population: A Cohort Study. (2013)
Langan, Sinead, Smeeth, Liam, Margolis, David J, Thomas, Sara L
I
interpretAMR/AMRrules. (2024)
Holt, Kathryn E., Hawkey, Jane
Improving modelling for epidemic responses: reflections. (2023)
Sherratt, Katharine, Abbott, Sam, Carnegie, Anna, Liu, Yang
Impact of vaccinations, boosters and lockdowns on COVID-19 waves in French Polynesia. (2023)
Chapman, Lloyd A.C., Aubry, Maite, Maset, Noemie, Russell, Timothy, Knock, Edward S, Lees, John A, Mallet, Henri-Pierre, Cao-Lormeau, Van-Mai, Kucharski, Adam J.
ISIDLSHTM/CoBeDOA. (2022)
Benest, John
ISAC Protocol 19_129 - Common infections and incident dementia: a historical cohort study using UK primary and secondary care data. (2021)
Muzambi, Rutendo, Bhaskaran, Krishnan, Brayne, Carol, Chaturvedi, Nish, Smeeth, Liam, Warren-Gash, Charlotte
idmodelr: Infectious Disease Model Library and Utilities. (2020)
Abbott, Sam, Endo, Akira
ISAC Protocol 17_197R: The effect of renin-angiotensin system inhibitors on haemoglobin. (2020)
Mansfield, Kathryn E., Nitsch, Dorothea, Smeeth, Liam, Iwagami, Masao, Johnston, Rosalynd, Tomlinson, Laurie A.
IDEAS project - Professional advice network study in Ethiopia. (2018)
Sabot, Kate
description
IDEAS project - Private sector health data sharing study in West Bengal. (2015)
Gautham, Meenakshi, Manish, Subharwal, Sanjay, Gupta, Spicer, Neil
IDEAS project - Qualitative data for the Data Informed Platform for Health formative study in West Bengal. (2015)
Bhattacharyya, Sanghita
IDEAS project - Private sector health data sharing study in Uttar Pradesh. (2014)
Gautham, Meenakshi, Subharwal, Manish, Gupta, Sanjay, Spicer, Neil, Mishra, Nirmala
description
In Silico Spoligotyping. (2012)
Coll, Francesc, Mallard, K, Preston, MD, Bentley, S, Parkhill, Julian, Mcnerney, Ruth, Martin, N, Clark, Taane
INTCENS: Stata module to perform interval-censored survival analysis. (2005)
Griffin, James
J
joshwlambert/DAISIEprepExtra. (2024)
Lambert, Joshua W.
julianmatthewman/Eczema_outcomes_public. (2024)
Matthewman, Julian
johntaz/nhs-opt-outs. (2024)
Tazare, John, Henderson, Alasdair
jodyphelan/host-pathogen. (2023)
Phelan, Jody
jodyphelan/tbdb. (2023)
Phelan, Jody E., Menzel, Peter
jmaburto/ex_USA_racial-ethnic_differences. (2022)
Aburto, José Manuel
jenAdavidson/sccs_fluvacc_cvd. (2022)
Davidson, Jennifer
jarvisc1/2020-reporting. (2021)
Jarvis, Christopher I., Jombart, Thibaut
johntaz/HDPS-Stata-Demo. (2021)
Tazare, John
johntaz/HDPS-Diagnostics. (2021)
Tazare, John
johntaz/COVID-Collateral. (2020)
Tazare, John
jstockwin/EpiEstimApp: v1.0.0. (2019)
Stockwin, Jake, Thompson, Robin, Cori, Anne, Jombart, Thibaut, Kamvar, Zhian N., FitzJohn, Rich
jomo: Multilevel Joint Modelling Multiple Imputation. (2016)
Quartagno, Matteo, Carpenter, James
K
klebgenomics/KlebNNSsero. (2025)
Holt, Kathryn E., Keegan, Shaun
kingaa/pomp. (2025)
King, Aaron A, O'Dea, Eamon, Asfaw, Kidus, Wheeler, Jesse, Breto, Carles, Ionides, Edward, Akinshin, Andrey, Voipio, Timo, Funk, Sebastian
klebgenomics/Kaptive. (2025)
Wick, Ryan R., Stanton, Thomas, Wyres, Kelly L, Holt, Kathryn E.
klebgenomics/Kleborate: v3.0.0. (2024)
Ryan Wick, Holt, Kathryn E., marlam89, kelwyres, Maranga, Mary, Petit III, Robert A., da Silva, Anders Goncalves, Deveaud, Eric, Lampa, Samuel, Stanton, Tom
kieshaprem/hpv-1-dose: First release of the HPV 1-dose global repository. (2023)
Prem, Kiesha
katiito/rsvvaccines_amr. (2022)
Atkins, Katherine E., Hodgson, David
kelwyres/Kaptive-Web. (2022)
Wick, Ryan, kelwyres, Pan, Alwyn, Stanton, Tom, Watts, Stephen, Lee, Thanh
kasimallel/Modelling-analysing-GN-ABR-for-transmission-in-a-Chilean-semi-rural-community. (2022)
Allel, Kasim
katholt/RedDog. (2022)
d-j-e, Holt, Kathryn E., Wyres, Kelly L
katholt/srst2. (2021)
Inouye, Michael, Dashnow, Harriet, Pope, Bernie, Wick, Ryan, Holt, Kathryn E.
katholt/sonneityping: v20210201. (2021)
Holt, Kathryn E., Hawkey, Jane, Paranagama, Kalani
Kleborate v2.0.0. (2020)
Holt, Kathryn E., Lam, Margaret, Wick, Ryan
kaitejohnson/School_reopening. (2020)
Johnson, Kaitlyn E.
L
lshtm-tbmg/tbmod-pub-funding-impacts. (2025)
Clark, Rebecca
LuciaSegovia/geospatial_analysis. (2025)
Segovia De La Revilla, Lucia
LuciaSegovia/FAO-fisheries. (2024)
Segovia De La Revilla, Lucia, dzvoti, Codd, Tom
lshtm-tbmg/tbmod-pub-undernutrition. (2024)
Clark, Rebecca
LSHTMPathogenSeqLab/malaria-hub. (2024)
juuzia, Ngwana-Joseph, Gabrielle
lshtm-vimc/prime. (2024)
Abbas, Kaja M., Vaccine Impact, Hadley, Liza
lucy-gf/imd-covid. (2024)
Goodfellow, Lucy
linfeng-wang/GMM4TB. (2023)
Wang, Linfeng
lshtm-public/rds-ui. (2023)
Ekoriko, Promise
Local and long-distance migration among young people in rural Malawi: importance of age, sex and family (author-writter code). (2023)
Mclean, Estelle
lshtm-tbmg/tbvax-pub. (2022)
Weerasuriya, Chathika, Clark, Rebecca
LinaMadaniyazi/Assessing-seasonality-and-the-role-of-its-potential-drivers-in-environmental-epidemiology-a-tutorial. (2022)
Madaniyazi, Lina, Tobias, Aurelio, Kim, Yoonhee, Chung, Yeonseung, Armstrong, Ben, Hashizume, Masahiro
Landmarking: Analysis using Landmark Models. (2022)
Barrott, Isobel, Barrett, Jessica, Keogh, Ruth, Sweeting, Michael, Stevens, David
liang-yu12/vd_covid. (2021)
Lin, Liang Yu
LSHTM-ORK/ODK_Biometrics. (2021)
Roberts, Chrissy, Stott, Callum
LSHTM Data Compass Procedures. (2021)
LSHTM Library & Archives Service
LSHTM-ORK/OpenMakingKit. (2020)
Roberts, Chrissy, LSHTM Global Health Analytics Group
LSHTM-ORK/EDK_Automation_Tools. (2020)
Roberts, Chrissy, LSHTM Global Health Analytics Group
LSHTM-ORK/OBD. (2019)
Roberts, Chrissy, LSHTM Global Health Analytics Group
LSHTM Research Data Management Policy. (2018)
LSHTM Library & Archives service
LSHTM Data Management Plan for Research Students. (2018)
LSHTM Library & Archives Service
LSHTM Data Management Plan for research projects. (2018)
LSHTM Library & Archives Service
LSHTM APCs 2015 (Jan-June). (2015)
Lawson, Stuart, Murtagh, John
description
Limiting Long-Term Illness: Longitudinal Perspectives, 1971-2006. (2010)
Grundy, Emily
M
migariane/eltmle. (2025)
Luque-Fernandez, Miguel Angel, Maringe, Camille, Smith, Matthew J.
MGDb 01. Scope and General Concepts. (2025)
Modell, Bernadette, Malherbe, Helen, Blencowe, Hannah, Mooorthie, Sowmiya, Petrou, Mary, Darlinson, Matthew, Lawn, Joy
description
Model for "Estimating the health and macroeconomic burdens of tuberculosis in India, 2021-2040". (2024)
Jensen, Henning Tarp
folder_zip
ManuelaQuaresma/CSI. (2024)
Rubio, Francisco Javier, Quaresma, Manuela, Rachet, Bernard
Malawi Epidemiology and Intervention Research Unit Non-Communicable Disease Survey data, 2013-2017 - author-written Stata code. (2024)
Mclean, Estelle
MatthewHiggins2017/PanPlasmodiumRPALFManuscript. (2024)
Higgins, Matthew
Microclimate dataset of the SAFE project landscape. (2023)
Jucker, Tommaso, Hardwick, Stephen R, Both, Sabine, Elias, Dafydd MO, Ewers, Robert M, Milodowski, David T, Saager, Elise, Iwamura, Takuya, Murray, Kris, Swinfield, T, Coomes, David A
mrc-ide/deterministic-malaria-model: nets_paper. (2023)
Unwin, Juliette, Challenger, Joseph, Watson, O. J., Hellewell, Joel, FitzJohn, Rich, Sherrard-Smith, Ellie
mbkoltai/RSV-resurgence-model. (2022)
Koltai, Mihaly, Krauer, Fabienne
Mapping the evidence of plant-based alternative foods: A systematic literature review protocol on nutritional, health, and environmental impacts. (2022)
Nájera Espinosa, Sarah, Pastorino, Silvia, Scheelbeek, Pauline
MatthewHiggins2017/bioconda-PrimedRPA. (2022)
Higgins, Matthew
mrc-ide/covid-vaccine-impact-orderly. (2022)
Barnsley, Gregory, Watson, Oliver J
metasens: Statistical Methods for Sensitivity Analysis in Meta-Analysis. (2022)
Schwarzer, Guido, Carpenter, James R., Rücker, Gerta
MatchThem: Matching and Weighting Multiply Imputed Datasets. (2021)
Pishgar, Farhad, Greifer, Noah, Leyrat, Clemence, Stuart, Elizabeth
mexhaz: Mixed Effect Excess Hazard Models. (2021)
Charvat, Hadrien, Belot, Aurélien
martyn1fyles/HouseholdContactTracing. (2021)
Abbott, Sam, Fyles, Martyn
Multi-Country Model Application for RSV Cost-Effectiveness Policy (McMarcel). (2020)
Willem, Lander, Xiao, Li, Antillon, Marina, Bilcke, Joke, Jit, Mark, Beutels, Philippe
Microscope Smartphone Adapter (Customisable). (2020)
Roberts, Chrissy
description
mrc-ide/EpiEstim: 2.2-3. (2019)
Cori, Anne, Kamvar, Zhian N., Stockwin, Jake, Jombart, Thibaut, Thompson, Robin, Dahlqwist, Elisabeth
migariane/HETMOR-Causal-Inference: Effect Modification and Collapsibility in Evaluations of Public Health Interventions. (2019)
Fernandez, Miguel Angel Luque, Redondo, Daniel
migariane/cvAUROC: Cross-validated AUC for Stata users. (2019)
Fernandez, Miguel Angel Luque
migariane/Stillbirth: Analysis Stillbirth risk by SES in Spain. (2019)
Fernandez, Miguel Angel Luque, Thomas, Aurielle, Gelaye, Bizu, Racape, Judith, Sanchez-Perez, Maria Jose, Williams, Michelle A.
migariane/ColliderApp: ColliderAppLuque. (2019)
Fernandez, Miguel Angel Luque, Schomaker, Michael, Redondo-Sanchez, Daniel, Perez, Maria Jose Sanchez, Vaidya, Anand, Schnitzer, Mireille E.
migariane/EASP_NET_SURV: Tutorial Net Survival. (2019)
Fernandez, Miguel Angel Luque
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak. (2019)
Kafetzopoulou, L. E., Pullan, S. T., Lemey, P., Suchard, M. A., Ehichioya, D. U., Pahlmann, M., Thielebein, A., Hinzmann, J., Oestereich, L., Wozniak, D. M., Efthymiadis, K., Schachten, D., Koenig, F., Matjeschk, J., Lorenzen, S., Lumley, S., Ighodalo, Y., Adomeh, D. I., Olokor, T., Omomoh, E., Omiunu, R., Agbukor, J., Ebo, B., Aiyepada, J., Ebhodaghe, P., Osiemi, B., Ehikhametalor, S., Akhilomen, P., Airende, M., Esumeh, R., Muoebonam, E., Giwa, R., Ekanem, A., Igenegbale, G., Odigie, G., Okonofua, G., Enigbe, R., Oyakhilome, J., Yerumoh, E. O., Odia, I., Aire, C., Okonofua, M., Atafo, R., Tobin, E., Asogun, D., Akpede, N., Okokhere, P. O., Rafiu, M. O., Iraoyah, K. O., Iruolagbe, C. O., Akhideno, P., Erameh, C., Akpede, G., Isibor, E., Naidoo, D., Hewson, Roger, Hiscox, J. A., Vipond, R., Carroll, M. W., Ihekweazu, C., Formenty, P., Okogbenin, S., Ogbaini-Emovon, E., Günther, S., Duraffour, S.
MI-CC. (2018)
Keogh, Ruth
migariane/CER_SEER_FL_RTvsCH: Cancer Survival Outcome among Stage I follicular Lymphoma Cancer Patients Treated with Monotherapy: Radiotherapy versus Systemic Treatment. (2018)
Fung Lee, Shing, Ng, Ting Ying, Wong, Frank Chi Sing, Fernandez, Miguel Angel Luque
Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". (2017)
Mccreesh, Nicky
description
MESH subjects file for Eprints. (2016)
Reid, Andy
description
mvmeta: Multivariate and Univariate Meta-Analysis and Meta-Regression. (2015)
Gasparrini, Antonio
N
NikkiR08/AMR-UCR. (2025)
Naylor, Nichola R.
NikkiR08/VAF_AMR_EconBurden. (2025)
Naylor, Nichola R.
nicolacfoster/dcea.ana: ASCENT DCEA. (2024)
Foster, Nicola
nextstrain/nextclade. (2024)
Aksamentov, Ivan, Neher, Richard, Roemer, Cornelius, mt-gitlocalize, Parker, Anna Anya, Lin, Victor, Sibley, Thomas, Negrón, Daniel Antonio, Nextstrain bot, Anderson, John SJ, Snyk bot, Hodcroft, Emma, Actat, Rubinsteyn, Alex, Grüning, Björn, Tegomoh, Bryan, Chen, Chaoran, Bottoms, Christopher, Maguire, Finlay, Huddleston, John, Lee, Jover, Sanderson, Theo, Harkins, Elias
numberize: Convert Words to Numbers in Multiple Languages. (2024)
Hartgerink, Chris, Lambert, Joshua W., Mané, Karim, Gruson, Hugo, Ahadzie, Bankole
NHLI-Respiratory-Epi/Alcohol_use_disorder_codelist. (2024)
Cook, Sarah
NaomiWaterlow/markov_model: V1.0.0. (2023)
Waterlow, Naomi
NaomiWaterlow/NextGenFlu_Kenya. (2022)
Waterlow, Naomi
NaomiWaterlow/NhaTrang_flu_rsv_interaction. (2022)
Waterlow, Naomi
NickyMcC/CasualAgeMixing. (2021)
Mccreesh, Nicky
nicholasdavies/amr-competition-diversity: Full release for publication. (2021)
Davies, Nicholas G.
NickyMcC/WithinClinics. (2021)
McCreesh, Nicky
Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa. (2018)
Walker, Thomas
National Survey of Sexual Attitudes and Lifestyles, 2010-2012. (2015)
Johnson, Anne
O
opensafely/post-covid-kidney-outcomes. (2025)
Mahalingasivam, Viyaasan, Zheng, Bang, lshbz1, Dillingham, Iain
obrady/CATI_Vietnam. (2024)
Brady, Oliver J.
opensafely/covid_collateral_imd. (2024)
Costello, Ruth, Henderson, Alasdair
opensafely/Paxlovid-and-sotrovimab. (2023)
Zheng, Bang, lshbz1
opensafely/covid_mortality_over_time. (2023)
Nab, Linda, Davy, Simon, Parker, Edward, Hulme, Will
opensafely/ckd-coverage-ve. (2022)
Parker, Edward, Horne, Elsie
Omran revisited. (2022)
Sudharsanan, Nikkil, Aburto, José Manuel, Riffe, Tim, van Raalte, Alyson
o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. (2021)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J., Jombart, Thibaut
opensafely/anticoagulants-research. (2021)
Wong, Angel, Bacon, Seb, Walker, Alex, Davy, Simon, Inglesby, Peter, MacKenna, Brian
Optimising health and economic impacts of COVID-19 vaccine rollout strategies in the WHO European Region. (2021)
Liu, Yang, Sandmann, Frank G., Barnard, Rosanna C., Pearson, Carl A.B., CMMID Working-19 Working Group, Pastore, Roberta, Pebody, Richard, Flasche, Stefan, Jit, Mark
o2geosocial. (2020)
Robert, Alexis, Funk, Sebastian, Kucharski, Adam J.
obrady/Wolbachia_CE. (2019)
Brady, Oliver J., Bastos, Leonardo
outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. (2018)
Jombart, Thibaut, Campbell, Finlay, Fitzjohn, Richard
obrady/Brazil_microcepahly_analysis_public. (2018)
Brady, Oliver J.
Open Data Kit PDF Report Creator. (2017)
Roberts, Chrissy
P
PierreMasselot/RiskExtrapolation. (2024)
Masselot, Pierre, Gasparrini, Antonio
ParisBap/TTE_ONTARGET. (2024)
Baptiste, Paris J.
PierreMasselot/Paper--2022--Epidemiology--PM2.5_components: Code for published paper. (2024)
Masselot, Pierre
PANGEA-HIV/PANGEA-Sequences: v1.0.0. (2023)
PANGEA-HIV Consortium
PierreMasselot/Paper--2022--Biostatistics--CGAIM. (2022)
Masselot, Pierre
PierreMasselot/Paper--2017--Nonparametric-L-moment-homogeneity-test. (2022)
Masselot, Pierre
PierreMasselot/cirls. (2022)
Masselot, Pierre
PierreMasselot/cgaim. (2022)
Masselot, Pierre
PierreMasselot/Paper--2022--EE--Heat_climate. (2022)
Masselot, Pierre
Participatory Visual Methods with caregivers of children with Congenital Zika Syndrome in Colombia: A case study. (2022)
Reichenberger, Veronika
description
PierreMasselot/Paper--2021--JRSS_SA--Machine_Learning_Thresholds. (2021)
Masselot, Pierre
petedodd/NotTB. (2021)
Dodd, Peter J
PierreMasselot/emdr. (2021)
Masselot, Pierre
Projecting the risk of mosquito-borne diseases in a warmer and more urbanised world: a multi-model multi-scenario intercomparison study. (2021)
Colón-González, Felipe J, Sewe, Maquins Odhiambo, Tompkins, Adrian M, Sjödin, Henrik, Casallas, Alejandro, Rocklöv, Joacim, Caminade, Cyril, Lowe, Rachel
PierreMasselot/primr. (2021)
Masselot, Pierre
ptti/ptti: Modelling the health and economic impacts of different testing and tracing strategies for COVID-19 in the UK. (2020)
Colbourn, Tim, Waites, William, Manheim, David, Sturniolo, Simone, Kerr, Cliff C., Panovska-Griffiths, Jasmina, Colbourn, Greg
PierreMasselot/Sedimentation_analysis. (2020)
Masselot, Pierre
PierreMasselot/Paper--2019--Air-pollution-warning-system. (2019)
Masselot, Pierre
PierreMasselot/hhws. (2019)
Masselot, Pierre
PierreMasselot/Paper--2018--Aggregated_response_in_regression. (2018)
Masselot, Pierre
Point-of-contact Interactive Record Linkage (PIRL). (2017)
Kabudula, Chodziwadziwa, Rentsch, Christopher
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. (2016)
Chen, Feng, Wang, Shuang, Jiang, Xiaoqian, Ding, Sijie, Lu, Yao, Kim, Jihoon, Sahinalp, S. Cenk, Shimizu, Chisato, Burns, Jane C., Wright, Victoria J., Png, Eileen, Hibberd, Martin L., Lloyd, David D., Yang, Hai, Telenti, Amalio, Bloss, Cinnamon S., Fox, Dov, Lauter, Kristin, Ohno-Machado, Lucila
PhyloTrack. (2015)
Benavente, Ernest, Coll, Francesc, Furnham, Nick, Mcnerney, Ruth, Glynn, Judith, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane
PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014)
Coll, Francesc, Preston, Mark, Guerra-Assunção, José Afonso, Hill-Cawthorn, Grant, Harris, David, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Drobniewski, Francis, Gagneux, Sebastien, Glynn, Judith R., Pain, Arnab, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane
Q
qleclerc/phage_antibiotic_dynamics. (2023)
Leclerc, Quentin J.
Qualitative and quantitative data for tuberculosis Infection prevention and control in South Africa (KwaZulu-Natal and Western Cape). (2022)
Grant, Alison, Kielmann, Karina
html
Qualitative and Quantitative Data for Tuberculosis Infection Prevention and Control in KwaZulu-Natal and Western Cape, South Africa, 2018-2021. (2022)
Grant, Alison D., Kielmann, Karina
qleclerc/mrsa_phage_dynamics. (2022)
Leclerc, Quentin J.
R
R Scripts for Analysis of food-group level household and individual dietary data. (2025)
Sandalinas, Fanny, Osman, Mohammed, Goto, Rie, Joy, Edward
Robinah23/Community-Vaccine-Impact-Vulnerability-Index-. (2025)
Nalwanga, Robinah
Rapid Assessment of Avoidable Blindness Report: Malaysia, Eastern Zone (2023). (2024)
International Centre for Eye Health
rachaelpung/temporal_networks. (2024)
Pung, Rachael, Kucharski, Adam J., Firth, Josh, Russell, Timothy W., Rogers, Tim, Lee, Vernon
Rapid Assessment of Avoidable Blindness Report: Tanzania, Kilimanjaro (2022). (2024)
International Centre for Eye Health
R markdown for: "Estimating Food Consumption, Micronutrient Intake, and the Contribution of Large-Scale Food Fortification to Micronutrient Adequacy in Tanzania". (2024)
Goto, Rie
folder_zip
ryotanakamura1/smoking. (2024)
Nakamura, Ryota
rorygibb/dengue_vietnam_ms: v1.0.0: Code base for Nature Communications MS. (2023)
Gibb, Rory
RNA Sequence data analysis using DESeq2 pipeline. (2023)
Namulondo, Joyce, Nyangiri, Oscar Asanya, Kimuda, Magambo Phillip, Nambala, Peter, Nassuuna, Jacent, Egesa, Moses, Nerima, Barbara, Biryomumaisho, Savino, Mugasa, Claire Mack, Nabukenya, Immaculate, Kato, Drago, Elliott, Alison, Noyes, Harry, Tweyongyere, Robert, Matovu, Enock, Mulindwa, Julius
rsetienne/DAISIE. (2023)
Neves, Pedro Santos, Lambert, Joshua W., Etienne, Rampal S., Bilderbeek, Richel, Xie, Shu, Valente, Luis, Hildenbrandt, H, Scherrer, Raphaël, Yangshen0325
Rapid Assessment of Avoidable Blindness Study Protocol Template. (2023)
International Centre for Eye Health
description
Restricted Randomisation Procedure and codes–inSCALE Mozambique. (2023)
Soremekun, Seyi, Källander, Karin, Lingam, Raghu, Branco, Ana-Cristina Castel, Batura, Nehu, Strachan, Daniel Ll, Muiambo, Abel, Salomao, Nelson, Condoane, Juliao, Benhane, Fenias, Kasteng, Frida, Vassall, Anna, Hill, Zelee, ten Asbroek, Guus, Meek, Sylvia, Tibenderana, James, Kirkwood, Betty
Relative role of border restrictions, case finding and contact tracing in controlling SARS-CoV-2 in the presence of undetected transmission: a mathematical modelling study. (2023)
Pung, Rachael, Clapham, Hannah E, Russell, Timothy W., Lee, Vernon J., Kucharski, Adam J.
raabteam/raab7-analysis. (2022)
Butcher, Robert M. R., Mccormick, Ian, RAAB Team
Rekyt/funrar. (2022)
Grenié, Matthias, Gruson, Hugo, Silge, Julia, Tucker, Caroline
ragreener1/deliveroo-scraper. (2022)
Greener, Robert
ragreener1/justeat-scraper. (2022)
Greener, Robert
RutendoMuzambi/InfectionsCognitionNeuroimaging. (2022)
Muzambi, Rutendo
raphaelvallat/pingouin. (2022)
Vallat, Raphael, Appelhoff, Stefan, Spaak, Eelke, JElfner, systole-docs, Tan, Gansheng, Paulino, Arthur, Dominic C., Leicas, Nárai, Ádám, Wallan, Samuel, Barthélemy, Quentin, Weixin, Jin, Singaravelan, Karthikeyan, Crabtree, Kyle N., Punčochář, Michal, Legrand, Nicolas, Jolly, Eshin, Cederstrand, Erik, To, Isaac, Hale, Jeff, Kahle, Michal, Mathot, Sebastiaan, Wase, Viktor, Filipec, Vojtech, gedeck, Libiseller-Egger, Julian, xfz329
r-spatialecology/shar. (2021)
Hesselbarth, Maximilian, actions-user, Sciaini, Marco, Hereñú, Darío, Gruson, Hugo, Etherington, Thomas
Replication Data for: Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. (2021)
Otiende, Mark, Bauni, Evasius, Nyaguara, Amek, Amadi, David, Nyundo, Christopher, Tsory, Emmanuel, Walumbe, David, Kinuthia, Michael, Kihuha, Norbert, Kahindi, Michael, Nyutu, Gideon, Moisi, Jennifer, Deribew, Amare, Agweyu, Ambrose, Marsh, Kevin, Tsofa, Benjamin, Bejon, Philip, Bottomley, Christian, Williams, Thomas N, Scott, J Anthony G
ropensci/drake. (2021)
Landau, Will, Landau, Will, Bond-Lamberty, Ben, Strasiotto, Matthew, McBain, Miles, Müller, Kirill, Mahr, TJ, Hughes, Ellis, Ross, Noam, Bell, Kendon, Ingerson, Sean, Aden-Buie, Garrick, Gomolka, Matthias, Knoblauch, Nicholas, Albers, Sam, brendanf, evalparse, Denney, Bill, Muir, Chris, Barrett, Malcolm, Krug, Rainer M, Kehayas, Vassilis, Schratz, Patrick, Zhao, Bruce, Hlynur, Gruson, Hugo, Jasper, Ooms, Jeroen, Walthert, Lorenz, Dray, Matt
reichlab/covidHubUtils. (2021)
Wang, Serena Yijin, Stark, Ariane, Evan Ray, Bosse, Nikos, Reich, Nicholas G, Sherratt, Katharine, Shah, Apurv, Wattanachit, Nutcha, Khoale1096, Huang, Yuxin David, Gerding, Aaron, Gruson, Hugo, Cramer, Estee, Shandross, Li, Abbott, Sam, Funk, Sebastian
ReproducibiliTea LSHTM. (2021)
Jaquiery, Matt, Schultze, Anna
Religion, Cooperation, Fertility, and Child Outcomes. (2020)
Shaver, John, Power, Eleanor A., Purzycki, Benjamin Grant, Shenk, Mary K, Bulbulia, Joseph A., Sear, Rebecca, Sosis, Richard, Watts, Joseph
ruthkeogh/landmark_CF. (2018)
Keogh, Ruth
R code and data for: "Multivariate meta-analysis for non-linear and other multi-parameter associations". (2017)
Gasparrini, Antonio, Armstrong, Ben, Kenward, Mike G.
R code and data for: "Reducing and meta-analysing estimates from distributed lag non-linear models". (2017)
Gasparrini, Antonio, Armstrong, Ben
R code and data for: "Temporal Variation in Heat–Mortality Associations: A Multicountry Study". (2017)
Gasparrini, Antonio, Guo, Yuming, Hashizume, Masahiro, Kinney, Patrick L., Petkova, Elisaveta P., Lavigne, Eric, Zanobetti, Antonella, Schwartz, Joel D., Tobias, Aurelio, Leone, Michela, Tong, Shilu, Honda, Yasushi, Kim, Ho, Armstrong, Ben G.
rbi: R Interface to LibBi. (2017)
Jacob, Pierre E., Lee, Anthony, Murray, Lawrence, Funk, Sebastian
R and STATA code for: "Conditional Poisson models: a flexible alternative to conditional logistic case cross-over analysis". (2017)
Armstrong, Ben G., Gasparrini, Antonio, Tobias, Aurelio
R code and data for: "Associations of Inter- and Intraday Temperature Change With Mortality". (2017)
Vicedo-cabrera, Ana M., Forsberg, Bertil, Tobias, Aurelio, Zanobetti, Antonella, Schwartz, Joel, Armstrong, Ben, Gasparrini, Antonio
R code for: "Distributed lag non-linear models". (2017)
Gasparrini, Antonio, Armstrong, Ben, Kenward, Mike G.
R code for: "Modeling exposure–lag–response associations with distributed lag non-linear models". (2017)
Gasparrini, Antonio
R code for: "The impact of heat waves on mortality". (2017)
Gasparrini, Antonio, Armstrong, Ben
R code, Stata code and data for: "Time series regression studies in environmental epidemiology". (2017)
Bhaskaran, Krishnan, Gasparrini, Antonio, Hajat, Shakoor, Smeeth, Liam, Armstrong, Ben
R code and data for: "A penalized framework for distributed lag non-linear models". (2017)
Gasparrini, Antonio, Scheipl, Fabian, Armstrong, Ben, Kenward, Mike
RAAB - Rapid Assessment of Avoidable Blindness. (2016)
Limburg, Hans, Meester, Walter, Kuper, Hannah, Polack, Sarah
Replication and re-analysis of a Kenyan stepped-wedge trial – Analysis files. (2015)
Davey, Calum, Aiken, Alexander, Hayes, Richard, Hargreaves, James
S
superspreading: Understand Individual-Level Variation in Infectious Disease Transmission. (2025)
Lambert, Joshua W., Kucharski, Adam J., Adam, Dillon C., Funk, Sebastian, Gupte, Pratik, Gruson, Hugo, Azam, James M., Hartgerink, Chris
ShayAdams/randomisation_code_rcts. (2025)
Soremekun, Seyi
ShayAdams/student_metrics_moodlelshtm. (2025)
Soremekun, Seyi
simulist: Simulate Disease Outbreak Line List and Contacts Data. (2025)
Lambert, Joshua W., Tamayo, Carmen, Gruson, Hugo, Gupte, Pratik R., Kucharski, Adam J., Hartgerink, Chris, Funk, Sebastian
seroanalytics/serojump. (2025)
Hodgson, David
STROBE and SRQR checklist for the study titled "Management of microbial keratitis by private pharmacies in Uganda: a study of knowledge, attitude, and practice". (2025)
Arunga, Simon, Ebong, Abel
description
supingling/spc. (2024)
Ling, Suping
Synthetic datasets for: "Long-term exposure to PM2.5 and mortality: an analysis of the UK Biobank". (2024)
Gasparrini, Antonio, Vanoli, Jacopo
SLGiHub/FIEBRE_Adult_severity_scores: FIEBRE Adult Severity Scores. (2024)
SLGiHub
sophiemoss/anopheles_popgen. (2024)
Moss, Sophie
supingling/colorectal_cancer. (2024)
Ling, Suping
Source files for 3D printed hamster anaesthesia delivery nosecone. (2024)
Langston, Harry, Fortes Francisco, Amanda, Doidge, Ciaran, Roberts, Chrissy H., Khan, Archie A., Jayawardhana, Shiromani, Taylor, Martin C., Kelly, John M., Lewis, Michael D.
Supplementary material for "Mapping the evidence of novel plant-based foods: A systematic review of nutritional, health, and environmental impacts in high-income countries". (2024)
Nájera Espinosa, Sarah, Hadida, Genevieve, Jelmar Sietsma, Anne, Alae-Carew, Carmelia, Turner, Grace, Green, Rosemary, Picetti, Roberto, Pastorino, Silvia, Scheelbeek, Pauline
Strobe statement for: "Health-related quality of life of adults with cutaneous leishmaniasis at ALERT Hospital, Addis Ababa, Ethiopia". (2024)
Lambert, Saba
SungmokJung/mpox_global: Initial release. (2023)
Jung, Sung-mok, Miura, Fuminari, Endo, Akira, Murayama, Hiroaki
SHINE 7-year Follow-up. (2023)
Piper, Joseph, Ntozini, Robert, Prendergast, Andrew
seabbs/badtobetter: Initial release. (2023)
Abbott, Sam
Shielding individuals at high risk of COVID-19: a micro-simulation study. Model and analyses. (2023)
Van Zandvoort, Kevin, Checchi, Francesco
shk313/Evaluating-sensitivity-and-specificity-from-LCM-a-simulation-study. (2023)
Keddie, Suzanne H
SADD synthetic cost-effectiveness dataset. (2023)
Leurent, Baptiste
Supplementary material from "A biphasic model of lifespan in nematode Caenorhabditis elegans worm". (2023)
Mulla, Suhayl, Ludlam, Adele R., Elragig, Aiman, Slack, Cathy, Balklava, Zita, Stich, Michael, Cheong, Alex
shk313/diagnostic-test-metaanalysis/CrAg. (2022)
Keddie, Suzanne
supingling/CancerInDiabetes. (2022)
Ling, Suping
Stan code and input data for estimating adjusted seroprevalence. (2022)
Lucinde, Ruth K., Mugo, Daisy, Bottomley, Christian, Karani, Angela, Gardiner, Elizabeth, Aziza, Rabia, Gitonga, John N., Karanja, Henry, Nyagwange, James, Tuju, James, Wanjiku, Perpetual, Nzomo, Edward, Kamuri, Evans, Thuranira, Kaugiria, Agunda, Sarah, Nyutu, Gideon, Etyang, Anthony O., Adetifa, Ifedayo M. O., Kagucia, Eunice, Uyoga, Sophie, Otiende, Mark, Otieno, Edward, Ndwiga, Leonard, Agoti, Charles N., Aman, Rashid A., Mwangangi, Mercy, Amoth, Patrick, Kasera, Kadondi, Nyaguara, Amek, Ng’ang’a, Wangari, Ochola, Lucy B., Namdala, Emukule, Gaunya, Oscar, Okuku, Rosemary, Barasa, Edwine, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, L. Isabella, Warimwe, George M., Agweyu, Ambrose, Scott, J. Anthony G., Gallagher, Katherine E.
seabbs/ecdc-weekly-growth-forecasts. (2022)
Abbott, Sam, Sherratt, Katharine
supingling/BiasAnalysis. (2022)
Ling, Suping
ShujiaHuang/qmplot. (2022)
Huang, Shujia, Libiseller-Rgger, Julian
Supplementary appendix 1b of Oliphant NP, Ray N, Curtis A et al. Optimising scale and deployment of community health workers in Sierra Leone: a geospatial analysis. 2022. (2022)
Oliphant, NP, Ray, Nicolas, Curtis, Andrew, Musa, Elizabeth, Sesay, Momodou, Kandeh, Joseph, Kamara, Anitta, Chimoun, Ebeny Francois Temgbait, Jackson, Debra, Doherty, Tanya
Swabbable Vagina and Vulva - Medical training device. (2022)
Roberts, Chrissy, Bustinduy, Amaya
Social contact data for Taiwan. (2022)
Fu, Yang-Chih, Wang, Da-Wei, Chuang, Jen-Hsiang, Fu, Han
skiniry/Trips-Viz. (2022)
Kiniry, Stephen J, Judge, Ciara
Stata Do Files for pooling and analysis. (2022)
Sweeney, Sedona
SoCFourier. (2021)
Silver, Matt
description
supingling/overtreatment. (2021)
Ling, Suping
STATA Do files for "Factors associated with excess mortality in the first wave of COVID-19 pandemic in the UK: a cohort analysis using the Clinical Practice Research Databank". (2021)
Strongman, Helen, Carreira, Helena
folder_zip
Supplemental material for: The Long and Winding Road: Archiving and Re-Using Qualitative Data from 12 Research Projects Spanning 16 Years. (2021)
Dodds, Catherine, Keogh, Peter, Bourne, Adam, McDaid, Lisa, Squire, Corinne, Weatherburn, Peter, Young, Ingrid
Supplementary data files & video for Carrasco-Tenezaca published in the Journal of the Royal Society Interface, 'The relationship between house height and mosquito house entry: an experimental study in rural Gambia. (2021)
Lindsay, Steve, Carrasco-Tenezaca, Majo, Jawara, Musa, Bradley, John, D'Alessandro, Umberto, Jeffries, David, Pinder, Margaret, Knudsen, Jakob
Supplementary Appendix 1b of "Optimizing geographical accessibility to primary health care at community level in Niger: a geospatial analysis". (2021)
Oliphant, Nicholas P, Ray, Nicolas, Bensaid, Khaled, Ouedraogo, Adama, Gali, Asma Yaroh, Habi, Oumarou, Maazou, Ibrahim, Panciera, Rocco, Muñiz, Maria, Manda, Samuel OM, Sy, Zeynabou, Jackson, Debra, Doherty, Tanya
supingling/glycaemic-control. (2021)
Ling, Suping
sysbio-curie/exact-stoch-log-mod. (2020)
Koltai, Mihály
sbfnk/rbi.helpers. (2020)
Funk, Sebastian, Finger, Flavio
seabbs/getTBinR. (2020)
Abbott, Sam, Bekker-Nielsen Dunbar, Maria, Smith, Arfon
Supplementary data for “Comparisons of Staphylococcus aureus infection and other outcomes between users of angiotensin-converting-enzyme inhibitors and angiotensin II receptor blockers: lessons for COVID-19 from a nationwide cohort study”. (2020)
Tomlinson, Laurie A., Iwagami, Masao, Bidulka, Patrick, Wong, Angel Y.S.
seabbs/SpeedyMarkov. (2019)
Abbott, Sam
sbfnk/epimixr. (2019)
Funk, Sebastian
seabbs/EstZoonoticTB. (2019)
Abbott, Sam
seabbs/ModelTBBCGEngland. (2019)
Abbott, Sam
SWPERMUTE: Stata module to compute Permutation tests for Stepped-Wedge Cluster-Randomised Trials. (2019)
Thompson, Jennifer
Supplementary Table 1 from Cross-cultural evidence does not support universal acceleration of puberty in father-absent households. (2019)
Sear, Rebecca, Sheppard, Paula, Coall, David A
scrapR. (2018)
Kucharski, Adam
Sensitivity analysis for missing data in cost-effectiveness analysis: Stata code. (2018)
Leurent, Baptiste, Gomes, Manuel, Faria, Rita, Morris, Stephen, Grieve, Richard, Carpenter, James R.
Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. (2018)
Funk, Sebastian
smcfcs: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification. (2017)
Bartlett, Jonathan, Keogh, Ruth
SnoopCGH. (2009)
Almagro-Garcia, Jacob, Clark, Taane
T
toshiakiasakura/polio_environmental_surveillance. (2025)
Asakura, Toshiaki R.
tomsumner/Timing_of_vaccination. (2025)
Sumner, Tom
theosanderson/taxonium. (2024)
Sanderson, Theo, Kramer, Alex, Goater, Richard, Hinrichs, Angie, L'YI, Sehi, Roemer, Cornelius, Kwon, Sung, Vargha, Koorous
typhoidgenomics/genotyphi. (2024)
Holt, Kathryn E., Dyson, Zoe Anne, Hawkey, Jane, flashton2003
thimotei/legacy_nAb_kinetics. (2024)
Russell, Timothy W., Kucharski, Adam J.
theosanderson/hospitalmedicines. (2024)
Sanderson, Theodore
tjhladish/dengue-abm. (2023)
Pearson, Carl A. B., Hladish, Thomas, Pillai, Alexander N., Chao, Dennis
thimotei/legacy_ct_modelling: Final version. (2023)
Abbott, Sam, Russell, Timothy W., Hellewell, Joel, Kucharski, Adam J.
timriffe/covid_age. (2023)
Riffe, Tim, Acosta, Enrique, Kamal, Manal, Donzowa, Jessica, mskniffka, Dudel, Christian, Cimentada, Jorge, Alburez, Diego, aishwaryamuralikrishnan, Aburto, José Manuel, Pascariu, Marius D., Del Fava, Emanuele, Ribeiro, Filipe
tjhladish/AbcSmc. (2023)
Pearson, Carl A. B., Hladish, Thomas
typhoidgenomics/TyphiNET. (2023)
Cerdeira, Louise, Dyson, Zoe Anne, Holt, Kathryn E.
Trescovia/AHHME. (2023)
Emes, Eve Tresco, Naylor, Nichola
tjhladish/covid-abm: Active Vaccination Experiment 2023-02-02. (2023)
Pillai, Alexander N., Hladish, Thomas, Pearson, Carl A. B., Toh, Ben, Noah4944, Stoltzfus, Arlin
tomsumner/Variance_SA_TB. (2022)
Sumner, Tom
TBVAX Model. (2022)
Clark, Rebecca, Mukandavire, Christinah, Weerasuriya, Chathika, Bakker, Roelof, White, Richard G
tomsumner/Latency_Model_Comparison_Public. (2020)
Sumner, Tom
timriffe/MacroShape. (2020)
Riffe, Tim, Aburto, José Manuel
The DIPLOMATIC Collaboration, Work Package2_Coredata Set. (2020)
von Wissmann, Beatrix, Gadama, Luis, Dube, Queen, Membe-Gadama, Gladys, Stock, Sarah, Chodzaza, Elizabeth, Masesa, Clemens, Crampin, Amelia C., Wood, Rachael
treespace: exploration of landscapes of phylogenetic trees. (2018)
Jombart, Thibaut, Kendall, Michelle, Almagro-Garcia, Jacob, Colijn, Caroline
Type 2 Diabetes drug codelist. (2018)
Wilkinson, Samantha, Douglas, Ian J., Stirnadel-Farrant, Heide, Smeeth, Liam, Tomlinson, Laurie A.
description
The development and validation of a Real Time Location System to reliably monitor everyday activities in natural contexts. (2017)
Judah, Gaby, de Witt Huberts, Jessica, Drassal, Allan, Aunger, Robert
grid_on
Tutorial code for "Distributed Lag Linear and Non-Linear Models
in R: The Package dlnm". (2017)
Gasparrini, Antonio
Treatment Contact Coverage for Probable Depressive and Probable Alcohol Use Disorders in Four Low- and Middle-Income Country Districts: The PRIME Cross-Sectional Community Surveys. Stata do file for baseline analysis. (2016)
Rathod, Sujit D., De Silva, Mary J., Ssebunnya, Joshua, Breuer, Erica, Murhar, Vaibhav, Luitel, Nagendra P., Medhin, Girmay, Kigozi, Fred, Shidhaye, Rahul, Fekadu, Abebaw, Jordans, Mark, Patel, Vikram, Tomlinson, Mark, Lund, Crick
description
The Effect of Cash, Vouchers, and Food Transfers on Intimate Partner Violence: Evidence from a Randomized Experiment in Northern Ecuador. (2016)
Hidrobo, Melissa, Peterman, Amber, Heise, Lori
TB Profiler. (2015)
Coll, Francesc, Mcnerney, Ruth, Preston, Mark D., Guerra-assunção, José Afonso, Warry, Andrew, Hill-Cawthorne, Grant, Mallard, Kim, Nair, Mridul, Miranda, Anabela, Alves, Adriana, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Hasan, Zahra, Hasan, Rumina, Glynn, Judith, Martin, Nigel, Pain, Arnab, Clark, Taane
folder_zip
U
Umoya omuhle: Infection prevention and control for drug-resistant tuberculosis in South Africa in the era of decentralised care: A whole systems approach. Research Questions 3 and 4_KwaZulu Natal. (2022)
Colvin, Christopher, Swartz, Alison, Kallon, Idriss, Kielmann, Karina, Macgregor, Hayley
Use of motorised transport and pathways to childbirth care in health facilities: Evidence from the 2018 Nigeria Demographic and Health Survey. S1 Data. (2022)
Avoka, Cephas Ke-on, Banke-Thomas, Aduragbemi, Beňová, Lenka, Radovich, Emma, Campbell, Oona M. R.
V
VAC4EU/CVM: WP4 SCCS sensitivity code for publication/Zenodo. (2024)
Messina, Davide, Paoletti, Olga, Belitser, Svetlana, Gini, Rosa M., Limoncella, Giorgio, Schultze, Anna
vaccine-impact/hpv_vaccine_equity. (2024)
Abbas, Kaja M., Vaccine Impact
VN Types Bayesian Modelling. (2023)
Bradley, Ellen
Validation of Correlates of Risk of TB Disease in High Risk Populations (CORTIS-HR) Study: Public, subject-level RISK11 signature scores and metadata. (2021)
Mendelsohn, Simon C, Fiore-Gartland, Andrew, Penn-Nicholson, Adam, Mulenga, Humphrey, Kimbung, Stanley, Borate, Bhavesh, Hadley, Katie, Hikuam, Chris, Musvosvi, Munyaradzi, Bilek, Nicole, Erasmus, Mzwandile, Jaxa, Lungisa, Raphela, Rodney, Nombida, Onke, Kaskar, Masooda, Sumner, Tom, White, Richard G, Innes, Craig, Brumskine, William, Hiemstra, Andriëtte, Malherbe, Stephanus T, Hassan-Moosa, Razia, Tameris, Michèle, Walzl, Gerhard, Naidoo, Kogieleum, Churchyard, Gavin, Scriba, Thomas J, Hatherill, Mark
Violence against children and natural disasters: A systematic review and meta-analysis of quantitative evidence. (2019)
Cerna-turoff, Ilan, Fischer, Hanna-Tina, Mayhew, Susannah, Devries, Karen
Validation of the Recording of Acute Exacerbations of COPD in UK Primary Care Electronic Healthcare Records. (2016)
Chotirmall, Sanjay Haresh, Rothnie, Kieran, Müllerová, Hana, Hurst, John R., Smeeth, Liam, Davis, Kourtney, Thomas, Sara L, Quint, Jennifer
description
Vascular Function Intervention Trial in sickle cell disease (V-FIT): Trial Protocol. (2014)
Cox, Sharon, Halcox, Julian, Prentice, Andrew, Kamala, Beatrice Abella
VCF Viewer (VARB). (2012)
Preston, Mark D., Manske, M, Horner, N, Assefa, S, Campino, S, Auburn, S, Zongo, I, Ouedraogo, JB, Nosten, F, Anderson, T, Clark, Taane
W
wastewater-informed-covid-forecasting. (2024)
Johnson, Kaitlyn E.
WCSCourses/Polygenic_Risk_Scores: 2024 Africa Iteration. (2024)
j-darocha
williameoswald/surveydesignr. (2024)
Oswald, William
Whole-Genome Sequencing of Chlamydia trachomatis Strains B/HAR36 and B/Tunis864. (2023)
London School of Hygiene & Tropical Medicine
WorldHealthOrganization/mca-pretermbirths-analysis. (2023)
Bradley, Ellen, Lopez, Gerard
wtm-leung/Network-modelling-review: Network modelling review v1.0.0. (2023)
Leung, William T. M.
weerasuriya/tbconvax-pcb. (2022)
Weerasuriya, Chathika Krishan
WOMAN-PharmacoTXA Trial: Pharmacokinetics and pharmacodynamics of tranexamic acid in women having caesarean section birth - Extended data. (2021)
Shakur-Still, Haleema, Arribas, Monica, Roberts, Ian, Chaudhri, Rizwana, Geer, Amber, Prowse, Danielle, Lubeya, Mwansa Ketty, Kayani, Aasia, Javaid, Kiran, Grassin Delyle, Stanislas
description
WINRATIOTEST: Stata module to calculate the unmatched Win Ratio for prioritised outcomes. (2021)
Gregson, John, Collier, Timothy
Y
yangclaraliu/covid_vac_africa: BMCMed_R3. (2023)
Liu, Yang, Procter, Simon R, Pearson, Carl A. B., Madriz Montero, Andres, Torres-Rueda, Sergio, Asfaw, Elias, Uzochukwu, Benjamin, Drake, Tom, Bergren, Eleanor, Eggo, Rosalind M., Ruiz, Francis, Ndembi, Nicaise, Nonvignon, Justice, Jit, Mark, Vassall, Anna
yangclaraliu/armslist_scraping. (2021)
Drake, Coleman, Hernandez, Ashley, Liu, Yang, Schwartz, Adam H., Sundaram, Maria
YLubell/SEA-CTN: surveillance-poct. (2018)
Chandna, Arjun, White, L.J., Pongvongsa, T, Mayxay, M, Newton, P.N., Day, N.P.J., Lubell, Yoel